Pseudomonas sp. LPH1: BHQ29_20490
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Entry
BHQ29_20490 CDS
T10175
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHQ29_20490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslp03019
]
BHQ29_20490
03400 DNA repair and recombination proteins [BR:
pslp03400
]
BHQ29_20490
Enzymes [BR:
pslp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHQ29_20490
Messenger RNA biogenesis [BR:
pslp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHQ29_20490
DNA repair and recombination proteins [BR:
pslp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BHQ29_20490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AQZ35421
LinkDB
All DBs
Position
complement(4506937..4508865)
Genome browser
AA seq
642 aa
AA seq
DB search
MSTLKRVFGFDQLRPGQEAVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISP
LLALMQDQLAFLHAHGIAAASIDSAQSREQAAEVMNRARSGELKILMISVERLKNERFRN
FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFGIKQVLLLTATATPRVIADMR
EKFAILEADVVTTGFYRPNLNLLVEPVPGGSKAQRLQQWLAPRRGQASIVYVTQQKTAEQ
VAERLARDGLAVSAYHAGMAHDVRESIQRRFMAGELQCIVATIAFGMGIDKRDIRNVVHF
DLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVYGDTPELAGIRAVLDDLRA
VGTGGQWELMLNQLSELSNIRALPLKTLLVQLELRGIIAPRYAYFAEYRFKLLLDDEALL
AQFEGERRQFVEAILACSKRARTWSTLDFDALYQQYGAERARVVKALDYFQEKGWLELES
KQMTEVYAVLDGDFDVAALANDLHAHFRTHEASEIARIQAMLALFESRECLSRRLALYFG
DAQAPERCGHCSVCQGRVASLPHPPELPPLSGRDAQALCAAFFEKHLQYAGHAPSHECLT
RFLCGVTTPLFTKLKARQLAGFAALEEYPYAEVREWLAASFT
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccctcaaacgtgtcttcggtttcgatcagctgcgtcccggtcaggaagcggtg
atcagcgccgtactcgccggtcgctcggcggcggcgatctttcctaccggttcgggcaag
tcgctgtgctaccagttgccggccttgcatctgccacacctgaccctggtgatctcgccg
ctactggcgctgatgcaggatcagctggccttcctgcatgcccatggcatcgccgcggcc
agcatcgattcggcgcagagccgcgagcaggccgccgaggtgatgaaccgcgcacgcagc
ggcgagctgaagattctgatgatctcggtggagcgcctgaagaacgagcgcttccgtaat
ttcatcgctcaggtaccgatctcactattggtggtcgacgaggcgcactgcatttccgag
tggggccacaatttccgccctgattacctcaagctgcccgactatcaacgccagttcggc
atcaagcaggtgctgctgctcaccgccacggcgacgcccagagtgatcgccgacatgcgc
gagaaattcgccatccttgaagcggacgtggtcaccaccggcttctaccggcccaacctc
aatctgctggtcgagccggtgcccggtggctccaaggcgcagcgcctgcagcagtggctg
gcgccgcggcgaggccaggcgagcatcgtttacgtcacccagcagaagaccgccgagcag
gtcgccgagcgcctggcgcgcgatggtctggcggtaagcgcctaccacgctggcatggcc
catgacgtgcgcgagtcgatccagcggcgcttcatggccggcgagctgcaatgcatcgtc
gccaccatcgctttcggcatgggcatcgacaagcgcgacatccgcaacgtggtgcacttt
gacctgcccaagtcggtggagaactacagccaggaaatcggtcgcgccgggcgtgatggc
caggcctcggactgcctggtgctggccagccgcgatggcctcagcgtgctggaaaacttc
gtctatggcgatacccctgagcttgccggcattcgtgcggtgctcgacgacctgcgtgcg
gtcggcacgggcgggcagtgggagctgatgctcaatcagctgtcggaactgagcaatatc
cgcgcgctgccattgaagaccctgctggtgcagctcgaattgcgcggcatcatcgcgccg
cgttatgcctacttcgccgaataccgcttcaagctactgctggacgacgaggccttgctg
gcgcaattcgagggcgagcgccgccagttcgtcgaggccatcctcgcctgctcgaagcgc
gcacgcacctggtcgacgctggacttcgatgccctgtatcagcagtacggcgccgaacgc
gcgcgggtggtcaaggcactggactacttccaggagaagggctggctggagctggaaagc
aagcagatgaccgaggtctatgccgtgctcgatggcgacttcgatgtggcggcgctggcc
aatgatttgcacgcccactttcgcacccacgaggccagtgagattgcccgcatccaggct
atgctcgccctgttcgagagccgtgaatgcctgagccggcgcctggcgctgtacttcggc
gatgcgcaggcgcccgagcgctgtgggcattgttcggtgtgccagggccgtgtcgccagc
ttgccgcacccacccgagctgccgccgttgagcggccgcgatgcacaggcgctgtgcgcg
gcttttttcgagaagcacctgcagtacgccggacacgcaccgagccatgagtgcctgacg
cgctttctctgtggtgtgaccacgcccttgttcaccaagctcaaagcgcgtcagttggct
ggcttcgctgcgttggaagagtacccctacgccgaggtacgtgagtggttggcggcatcg
ttcacgtag
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