Pseudomonas sp. LPH1: BHQ29_20815
Help
Entry
BHQ29_20815 CDS
T10175
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pslp Pseudomonas sp. LPH1
Pathway
pslp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pslp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHQ29_20815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pslp03021
]
BHQ29_20815
03019 Messenger RNA biogenesis [BR:
pslp03019
]
BHQ29_20815
Transcription machinery [BR:
pslp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BHQ29_20815
Messenger RNA biogenesis [BR:
pslp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BHQ29_20815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
NACHT
S1CSD-TOTE-2
Mor
Motif
Other DBs
NCBI-ProteinID:
AQZ35479
LinkDB
All DBs
Position
complement(4588239..4589498)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPIAELLDMAEQMGLENMARSRKQDIIFALLKKHAKSGEEISGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDSIN
FDRPENAKNKILFENLTPLFPNKRLTMEAGNGSTEDITGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELILDRRVSEKRVFPAINI
NKSGTRREELLTGEEELSRMWILRKLLHPMDEIAAIEFLIDKLKATKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgaccgaactcaagcaaaagccgattgccgaactgctggacatggccgaacag
atgggcctggaaaacatggctcgttcgcgcaagcaggacatcatcttcgccctgctgaaa
aagcatgccaaaagcggcgaggaaatttccggtgacggcgtgctggagatcctccaggac
ggtttcggcttcctgcgcagcgccgactcttcctacctggccggccctgacgacatctac
gtctcgcccagccagatccgccgtttcaacctgcgtaccggtgacaccatcgtcggcaag
atccgcccgccgaaggaaggcgagcgttacttcgccctgctcaaggtcgacagcatcaac
ttcgaccgtccggaaaacgccaagaacaagatcctgttcgagaacctgacgccgctgttc
cccaacaagcgcctgaccatggaagccggtaacggctccaccgaggacatcaccggccgt
gtgatcgacctctgtgcgccgattggcaagggccaacgcggcctgatcgtcgccccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcctcgaacatcacccgcaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgaccttcgacgagccgccgacccgccacgtg
caggtcgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggatgtg
gtcatcctgctcgactccatcacccgcctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtactgaccggtggtgtcgatgcccacgccctggagaagccgaagcgcttc
ttcggcgccgcgcgtaacatcgaagaaggcggctcgctgaccatcatcgctaccgcgctg
gtggaaaccggctcgaagatggacgaagtgatctacgaggaattcaagggcaccggcaac
atggagctgatcctcgatcgccgtgtttccgagaagcgcgtgttcccggcgatcaacatc
aacaagtcgggcacccgccgcgaagaactgctgaccggtgaagaagagctgtcgcgcatg
tggatcctgcgcaagctgctgcatccgatggatgagattgcggcgatcgagttcctcatc
gacaagctgaaagcgaccaagactaacgatgagttcttcctgtcgatgaagcgcaagtaa
DBGET
integrated database retrieval system
