Pseudarthrobacter sp. L1SW: KTR40_13405
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Entry
KTR40_13405 CDS
T10267
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psls Pseudarthrobacter sp. L1SW
Pathway
psls03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psls00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KTR40_13405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psls03021
]
KTR40_13405
03400 DNA repair and recombination proteins [BR:
psls03400
]
KTR40_13405
Enzymes [BR:
psls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KTR40_13405
Transcription machinery [BR:
psls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KTR40_13405
DNA repair and recombination proteins [BR:
psls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KTR40_13405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
PMD1-like
Motif
Other DBs
NCBI-ProteinID:
UEL27600
LinkDB
All DBs
Position
complement(2905879..2909778)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEAARHEELPNLQVEHDIEKKQLIDNRDSDIAAIARDLEGE
IARLEGEGAKAADKKKARDSADRQMANVRKRADADIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLESFDMQAESDLLRDIIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRVGSAGEGR
IFGSVSEAIMAFDARELHLNSQVKIRLEGFVPYAGWEAPEGWEPGQPALVQTSLGQVLFN
ETLPEDYPWVEAVADKGELSRIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAAKPEILAGYEERAAKIQGQYDKGLIDDDERRQELIEIWNKATNEIAQAMRDSLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLVTPIAVADSNGELVLDE
NVENSAYARTLAVDVVDSEGKVLAAAGTDCGDVVIDELFKAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGTEEIAYPVLRRSRLLIED
GDHVTVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEDANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTEVTVEPTEEAKAN
LFTGPSAFSDFSYDTLGGDGAPEFHAIPLDDYDLGNDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgcggctggtcttacggcgaggttaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggcccgtcccgggactgggaatgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgttgtggcgtt
gaggtcacccgcgcaaaggtccgccgcgagcgcatgggccacatcgaactggccgcaccc
gtcacgcacatctggtacttcaagggtgttccctcccgcctgggctacctccttgacctg
gcaccgaaggacctcgaaaaggtcatctacttcgctgcctacatgatcaccagcgttgat
gaagccgcccgccacgaggaactgcccaacctgcaggttgagcacgacatcgagaagaag
cagctgatcgacaaccgcgactccgacatcgcggccattgcccgcgacctcgaaggcgaa
atcgcccgtctcgaaggcgaaggcgccaaggctgccgacaagaagaaggcccgcgactcc
gccgaccgccagatggccaacgtgcgcaagcgcgccgacgccgacatcgagcgcctcgag
caggtctgggaccgcttcaagaacctcaaggtcgctgaccttgaaggtgacgaaggactg
taccgcgagctgcgcgaccgctatggcatgtacttcgaaggctccatgggtgccgaagcc
atcaagaagcgtcttgaaagcttcgacatgcaggccgagtcggacctgctgcgcgacatc
atcgccaacggcaagggccagcgcaagacccgtgccctcaagcgcctgaaggtggtcaat
gcgttcctgaccaccaacaacagcccgcttggcatggtcctcgacgccgtcccggtgatc
ccgccggaactgcgccccatggtccagctggacggcggccgcttcgcgacctccgacctc
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctg
ggtgctccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagctgttgacagc
ctcttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctcctcggcaag
cgcgtggactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcccagaacatcaagtcggccaagcgcatggttgagcgttaccgc
ccgcaggtctgggacgtgctggaagagatcatcaccgaacacccggtgctgctcaaccgt
gcacctaccctgcaccgcctcggcatccaggccttcgagccgcagcttgttgaaggcaag
gcaatccagctccacccgctggtttgtggcgccttcaacgccgacttcgacggcgaccag
atggcagtccacctgccgctgagccccgaagcccaggctgaagcccgcatcctgatgctg
tcctcgaacaacatcctgaagccctccgacggacgtccggtcaccctgccctcgcaggac
atgatcatcggcctctaccacctgaccaccaagcgtgtcggttcagctggcgaaggccgc
atcttcggttcggtttccgaagccatcatggccttcgacgcccgcgagctgcacctgaac
tcgcaggtcaagatccgcctcgaaggcttcgtaccgtacgcaggctgggaagctccggaa
ggctgggagccgggtcagcccgcactcgtccagacctccctgggccaggttctcttcaac
gagaccctgcccgaggactacccctgggttgaggctgttgccgacaagggcgaactgtcc
cgcatcgtcaatgacctcgccgagcgctacccgaaggtcgtcaccgcggcaacgctggac
aacctgaaggacgccggtttctactgggccacccgctcaggcgtcaccgttgccatctcg
gacatcgaggttccggccgcaaagccggagatcctcgccggctacgaagagcgcgccgcc
aagatccagggccagtacgacaagggcctgatcgacgacgacgagcgtcgccaggaactg
atcgagatctggaacaaggcaaccaacgagatcgcccaggcgatgcgtgacagcctgtcc
ccgatgaacaccatcaaccgcatggtgtcctccggtgcacgtggtaactggatgcaggtc
cgccagatcgcgggtatccgtggcctggtggccaacccgaagggtgaaattattccccgt
cccatcaagtcctcctaccgtgagggcctgtcggttctggaatacttcatcgccacgcac
ggtgcccgtaagggtcttgccgacaccgcgctgcgtaccgccaactcgggttacctgacc
cgtcgcctggtggacgtctcgcaggacgtcatcgtccgtgaagaggactgcggcacggag
cgtggcctggtcacgccgatcgccgtcgccgattccaacggtgagctggtcctggatgag
aacgtcgagaacagtgcctacgcacgtaccctcgccgtcgacgtcgtggactccgagggc
aaggttctcgcagccgccggcaccgactgcggcgacgtcgtcatcgacgagctgttcaag
gcaggcatcaccgaggtcaaggtccgctccgtactcacctgtgagtccagcgttggaacc
tgtgcactgtgctacggccgttcgttggccactggcaagaccgtggacatcggcgaggcc
gtgggcatcatcgccgcacagtccatcggtgagcccggtacccagctgaccatgcgtacg
ttccacaccggtggtgctgtctccgccagcggtggcgacgacatcacccagggtctgccc
cgtatccaggagctcttcgaagcccgtactccgaagggtgttgcaccgattgcagaagca
gccggccgcatcaccatcgaagagtccgagcgccagatgcgcctggtcatcaccccggat
gacggaaccgaagagatcgcctacccggtcctgcgccgttcacgcctgttgatcgaggac
ggcgaccacgtcaccgtcggccagaagctgatcaacggaccggtggatcccaagcaggtc
ctgcgcatcatgggtccgcgtgcggcacagaagttcctggtggacgaggtccagggcgtg
taccgcagccagggcatcggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcacggtcatcgagtccggcgaatcggacctgctgcccggcgagctcgcc
gagcgcagccgtttcgaggacgccaaccgccgcgttgtgtccgagggcaagactccggca
tccggacgtcctgagctcatgggcatcaccaaggcgtcgctggccaccgagtcctggctg
tccgctgcttccttccaggagaccacccgcgtcctgacgcaggcggccatggaaggcaag
agcgatccgctgctgggcctcaaggagaacgtcatcatcggtaagctgatcccggccggc
acgggcctcccgcgctacaccgaggtcaccgtggagcccactgaagaagcaaaggccaac
ctgttcaccggccccagcgcattcagtgacttctcgtacgacaccctgggcggcgacgga
gctcctgagttccacgccatcccgctggatgactacgacctgggcaacgacttccgctaa
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integrated database retrieval system
