Pseudomonas sp. Lz4W: B195_001285
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Entry
B195_001285 CDS
T11612
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pslz Pseudomonas sp. Lz4W
Pathway
pslz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pslz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B195_001285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pslz03400
]
B195_001285
Enzymes [BR:
pslz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
B195_001285
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B195_001285
DNA repair and recombination proteins [BR:
pslz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B195_001285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AUB73512
LinkDB
All DBs
Position
276481..277293
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVIVRERRLRWPIPEDLDVRLSGQKIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEAGLPAARHEHVDIELESGLALRYTDPRRFGAMLWSLD
PLNHELLLRLGPEPLTDLFDGERLFQLSRKRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAKSISRARYLKLAIEIKRILAAAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GYQPCKVCGTELREVKLGQRASVFCPRCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaattacctgaagtcgaaaccacccgccggggcattgccccgcaccttgaaggt
cagcgggtcagccgggtgattgtgcgcgagcgccgtttgcgctggccgatcccggaagac
ctggatgtgcgtctgtcggggcagaagatcgtgctggtggagcggcgcgccaagtatctg
ctgattaacgccgaagtcgggacgctgatcagccatttgggcatgtcgggcaacctgcgc
ctggtagaggccgggctgccggcggccaggcacgagcatgtggacatcgagctggagtcg
ggcctggcattgcgctacaccgacccgcgacgtttcggtgcgatgctctggagcctcgac
ccgctgaaccatgaattgctgctgcgccttgggccggagccactgaccgatctgtttgac
ggtgagcggctttttcagctgtcgcgcaagcgttcgatggccgtcaagccgttcatcatg
gataacgcagtggtggtgggcgtgggcaatatctacgcgactgaagcgctgtttgctgcc
ggcattgatccgcgtcgcgaagccaaaagcatctcacgggcgcgctatttgaagctggcg
atcgagatcaagcggattctggccgcggcgattgagcgtggaggcaccaccttgcgcgac
tttatcgggggcgacggacaacctggctacttccagcaagagctgtttgtttacgggcgt
ggctaccagccctgcaaggtctgtggcaccgagttgcgcgaggtcaagctgggccagcgc
gccagcgtgttctgcccgcgctgccagagctga
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