Pseudomonas sp. Lz4W: B195_015295
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Entry
B195_015295 CDS
T11612
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pslz Pseudomonas sp. Lz4W
Brite
KEGG Orthology (KO) [BR:
pslz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pslz03019
]
B195_015295
Enzymes [BR:
pslz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B195_015295
Messenger RNA biogenesis [BR:
pslz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B195_015295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
APHB_HrpA
AAA_22
AAA_25
nSTAND3
NACHT
T2SSE
AAA_30
nSTAND_NTPase5
SRP54
DUF8324
Motif
Other DBs
NCBI-ProteinID:
AUB76151
LinkDB
All DBs
Position
complement(3404721..3408635)
Genome browser
AA seq
1304 aa
AA seq
DB search
MTDESPAIDQLLKNLDQAMIADRHKLRRQLHELRKKPDDVAKLAAWAERVQASCAQVKAR
AASVPLIRYDENLPIAAKRDEIKAALLKHQVLILAGETGSGKTTQLPKICLEIGRGQHGL
IGHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQH
DRYLERYDTIIVDEAHERSLNIDFLLGYLKILLPRRPDLKVIITSATIDLERFSKHFNDA
PIVEVSGRTFPVETWYRPLTSEQDEEGNSVEEDLSVDQAIIATLDEIAAFERSERKSPGD
VLVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAE
TSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLY
AEEDFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAITDGFNLLQEL
SAVNRENQLTPLGRQLARLPVDPRMGRMLLEAARLGSLQEVLIVASAMSVQDPRERPPER
QQAADQAHAQWKDVDSDFAGLINVWRGFEEQRQALTASPLRSWCRKNFLNYLRLREWRDS
HRQLSLICRDMQLTVNKEPADYPKLHKAVLSGLLSQIGQKTEEGDYLGARQRRFWIHPSS
GLGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNYFEPHWEKKRGQVVA
FEQITLFGLIVVGRRAVHYGPIDPVMSRELFIREGLVRGEIQSRAKCLTANAQLLEQLDE
LEAKARRRDILADEETLYGFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLAR
EATEITAQHFPDTLHLGDLTLELSYHFEPNHPRDGVTLKVPAPLLSVLPPERLEWLVPGM
IEAKCIALVRCLPKALRKNFVPVPDFVKAALQRMAYGEGSLPQALGRELLRMTGARVSDE
AWAEAAQQVENHLKMNLEIVDGEGKFLGEGRDLAELTARFAQASQAALAVPQTAKNQQPV
EAKVFAPVAEKTQQKIAGLSMTVYPALVEEGNSVKEGRFSTPAEAEYQHRRALQRLLMQQ
LAEPAKFLRAKLPGLTELGLLYRELGRVESLVEDILLASLDSCILEGEAVLPRDGAGLAA
LAERKRGAWTEHAEKLARLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQLGNLVYPG
FVRETPAVWLKELPRYLKAIEMRLEKLPGQVQKDRVWSGELSGLWAQYQARATKHAQEGK
RDPQLELYRWWLEEYRVSLFGQQLGTKVPISDKRLSKQWSQVDA
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgcctgctatcgaccaactgttgaaaaaccttgatcaagccatgatt
gccgaccgccataaactgcgtcggcaattgcatgagctgcgcaaaaagcctgacgacgtg
gccaaattggccgcgtgggccgagcgggtgcaggcatcgtgcgcgcaggtgaaagcgcgg
gcggccagtgtgccgctgattcgttatgacgaaaacctgccgatcgccgccaagcgcgat
gagatcaaggccgcgttgctcaagcatcaggtgctgattctggccggtgaaaccggctcg
ggtaaaaccacccagttgccgaaaatctgtctggaaatcggtcgcggtcaacacggtttg
atcggccatacccagccccgtcgaattgcggcgcgcagcgtagccagccgggtggccgaa
gaactggccacgccgttgggcgcgctggtggggtaccaggtgcggtttgaggatcaaagc
gattccaacaccctggtcaaactgatgactgacggtatcctgctggccgaaacccagcac
gaccgttatctggaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctg
aacatcgattttttgctgggctacctgaaaatcctgctgccgcgtcgtccggacctgaaa
gttatcatcacttcggccaccatcgatctggagcgcttctccaagcacttcaacgatgcg
ccgattgtcgaggtgtcgggccgtaccttcccggtcgagacctggtatcgaccgctgacc
tcggagcaggatgaagagggcaacagtgtcgaggaagatttgagcgtcgaccaggcgatc
attgccacccttgatgaaattgccgcctttgagcgcagtgaacgcaaaagccccggcgat
gtgctggtgttcttgcccggtgagcgggaaattcgcgacgccgccgagatgctgcgcaag
gcgcaactcaagcacaccgaaattctgcctctgtatgcgcgattgtcacctgccgagcag
cagcgcattttccagtcgcacccggggcgccgcgtggtgctggcaaccaacgtggctgaa
acctcgctgacggtgccgggcattcgctatgtgatcgacagcggcaccgcccgtatcagc
cgctatagctatcgggccaaggttcagcgcctgcccatcgaagcgatttcccaggccagc
gccaatcagcgtaaaggccgttgcggtcgggttgaaccgggtatctgtgtgcgtttgtac
gccgaagaagacttcaacgggcgcccggaatttactgatccggaaattctgcgcaccaac
cttgccgccgtcatcttgcagatgttgcatctgcgtctgggcgagattactgcgttcccg
tttatcgaaccgccggatggcaaggccatcactgacggtttcaacctgttgcaagaactg
tcggcagtgaaccgcgagaaccagctcacaccgctggggcgtcaactggcgcgcttgccg
gtggacccgcgcatgggtcgcatgctgctggaagcagccaggctcggcagtttgcaggaa
gtgttgattgttgccagtgcgatgtcggtacaggacccccgtgagcgtccgcccgagcgc
cagcaagcggcggatcaggcccacgcccaatggaaagacgttgactccgatttcgccggg
ctgatcaatgtctggcgcggctttgaagagcagcgccaggccttgaccgccagtccgttg
cgcagctggtgtcgcaagaacttcctcaattacctgcggctgcgcgaatggcgcgattca
caccgccaattgagtctgatctgccgcgacatgcagttgacggtcaataaagaaccggcc
gactaccccaagctgcacaaggcggtgttgtccggcttgctcagccagatcgggcaaaag
actgaagagggggattacctcggcgcacgtcagcgccggttctggattcatccttcttcc
ggcctgggtaaaaaacgcccgcaatggctgatgaccgccgaactggtggagaccaccaag
ctctatgcgcgaatggtggccaagatcgagccggactggatcgagccgctggccgggcac
ctgatcaaaaagaactactttgagccgcactgggagaagaagcgcggacaagtggtggcc
tttgagcagatcaccttgttcggcctgatcgtggtcggtcggcgtgccgtgcattacggg
ccgattgaccctgtgatgtcccgcgagctgtttatccgcgaaggtctggtgcggggcgaa
atccagtcgcgggccaagtgcctgacggccaatgcccaactgctggaacaacttgacgag
ctggaggccaaggcccggcgccgcgatattctggccgacgaagaaaccctgtacgggttc
tacgacgcgcgcctgcctgctgaaattcatcagactgccaccttcgacagctggtatcgc
atcaacagccagaaagatccgcagctgttgatcatgcgtgaagaagacgtgctggcccgt
gaagccactgaaatcaccgcccagcatttcccggacaccctgcatctgggggatttgacc
ctggagctgagttatcacttcgagcccaaccatccccgtgacggggtgacgctcaaagta
cctgcgccgttgctttcggtgttgccgcccgagcgtctggaatggctggtgccgggcatg
atcgaggccaagtgcattgctctggtgcgctgcctgcccaaggcactacggaaaaacttt
gtgccggtgccggacttcgtcaaggccgccttgcagcgtatggcctacggcgaagggtcg
ttgccccaggcactgggtcgcgagctgttgcgcatgaccggggcgcgggtgagtgacgaa
gcctgggccgaagctgcgcagcaggtggaaaaccacctgaaaatgaatctcgaaattgtt
gatggcgagggcaagtttctcggcgaaggccgcgatctggccgagctgacagcacgcttt
gcccaggccagtcaggccgcgttggcggtgccgcaaacagcgaaaaaccagcagccggta
gaggccaaggtgtttgccccggtggccgaaaaaacccagcagaagattgccgggttgtcg
atgacggtttatccggcattggtagaagagggcaacagcgtcaaggaaggacgtttctcg
accccggccgaggctgagtatcagcatcgtcgggcgctccagcggttgttgatgcagcaa
ctggccgagccggccaaattcttgcgcgccaagctgccggggctgaccgaactgggcctg
ttgtaccgcgagctgggcagggtcgagagtctggtggaagacattctgctggccagcctc
gacagctgcatccttgaaggcgaagccgtgctgccgcgcgatggtgcgggcctggctgca
cttgccgagcgcaagcgcggggcctggaccgagcatgccgaaaagctggccaggctgacg
ctggatattctcaagctgtggcacgggctgcaaaagcgcttcaagggcaagatcgatctg
gctcaagcggttgccctgaatgacatcaagcagcagctcggcaatctggtgtatccgggt
tttgtccgggaaaccccggcagtctggctcaaggaactgccgcgctacctcaaggccatt
gaaatgcgcctggagaaactccccggccaggtccagaaagaccgggtctggagtggcgag
ctgagcggtttgtgggcgcagtaccaggcccgggccaccaagcatgcccaggaaggcaag
cgcgacccgcagctggagctgtatcgctggtggctggaggaatatcgcgtgtcgctgttc
ggccagcagttggggaccaaagtgccgatttcggacaaacgcctgagcaaacaatggagc
caggtggacgcctga
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