Pseudoalteromonas sp. SM9913: PSM_A0117
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Entry
PSM_A0117 CDS
T01374
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
psm
Pseudoalteromonas sp. SM9913
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psm03009
]
PSM_A0117 (dbpA)
Enzymes [BR:
psm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PSM_A0117 (dbpA)
Ribosome biogenesis [BR:
psm03009
]
Prokaryotic type
rRNA helicases
PSM_A0117 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_19
Helicase_C_2
P-loop_SecA
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADT67076
LinkDB
All DBs
Position
I:120551..121951
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AA seq
466 aa
AA seq
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MEFTVTATAFSSLALPSGLVDNLSTLGYTQMTPVQAQSLPPVLSGKDIIAQAKTGSGKTA
AFSLGVLAKLNVKRFRIQSLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQ
IGSLEHGAHIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIP
TNRQTLLFSATFPKSIEAIAKRVLSNPEMIKVEEQQEKSTIKQYFYKMDNNKQRYPTLKL
LLLKFTPQSCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASI
LVATDVAARGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVA
QIGDHYERDFTPEPMPSYNLLDKPPYKPEMVTLMIDAGKKQKVRAGDILGALTGKDGIAG
RQVGKINVLDNVAFVAVERNSSKPALRKLTEGNIKGRKIRARRLTR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggaatttactgtgactgcaactgctttttcatcgttggccttaccttctgggttagtt
gataatttatcaacactcggctacacccaaatgactcctgtacaggcacaaagcctgcct
cctgttttaagtggtaaagatattattgcccaagctaaaacaggctcaggtaaaactgcg
gcatttagtctgggcgttttagccaagctgaatgttaaacgctttcgtatccagtcgtta
gtgctgtgcccaacccgagagcttgcagagcaggtagcggttgaaatgcgcaaattagca
cgcggtattcataatattaaaattttaactttgtgtggcggggtatcaattggtcctcaa
attggctcacttgaacatggtgcgcatattattgtaggtacaccagggcgagttgacgac
catattcgtaaaggtacattgcgcttagatgatgttgaaacgctggtacttgatgaagcc
gaccaaatgcttgatatgggttttcaagacaccctcgatgccataattgagtgtattcca
acaaatcgtcaaacattgttatttagcgcgacttttccaaaatcaatcgaagccattgca
aagcgtgttttgagcaaccctgaaatgattaaagtagaagagcagcaagaaaaaagcact
atcaagcaatacttctataaaatggataataataagcaacgttatccaacccttaaatta
ctattacttaaatttaccccacaaagttgtgtggtgttttgtaataccaaggtagaaaca
cagcaagtatgtgatgatttagccgatgaaggcttcagcgctgttgcattgcatggcgat
ttagagcagcgtgaccgtgagcgtacactgattcattttgccaataagagtgcgtctatt
ttagtggcaaccgatgtagcagcacgcggcttagatattgatgacatggacatggtgatt
aactatcacttagcgcatgatccacaaacgcatgttcaccgtgtagggcgtaccgggcga
gcgggcaaaaaaggcattgcgtgttctatttacggtgatgctgagcaatttaaagtagcg
caaattggtgaccactatgagcgtgattttacccctgagccaatgccatcttataaccta
ttagataagcctccatacaaacctgaaatggtgactttgatgattgatgcaggcaaaaaa
caaaaagtgcgtgctggcgacattttaggcgcattaacaggtaaagatggtatagcaggg
cgccaagtgggtaaaattaatgtacttgataacgtggcttttgtcgcggtagagcgtaac
tcatctaaacccgcgttacgtaaattaaccgaaggcaatattaaagggcgtaaaatccgt
gctcgtcgcctgacgcgctag
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