Pseudoalteromonas sp. SM9913: PSM_A0127
Help
Entry
PSM_A0127 CDS
T01374
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03420
Nucleotide excision repair
psm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSM_A0127 (uvrD)
03430 Mismatch repair
PSM_A0127 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psm03400
]
PSM_A0127 (uvrD)
Enzymes [BR:
psm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSM_A0127 (uvrD)
DNA repair and recombination proteins [BR:
psm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSM_A0127 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PSM_A0127 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
AAA_11
DUF3553
SAP18
Motif
Other DBs
NCBI-ProteinID:
ADT67086
LinkDB
All DBs
Position
I:complement(140293..142458)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRSRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTS
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFDAETIRLEQNYRSTATILKASNALIQNNSE
RMGKSLWTDGNDGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGAVAKFVELIEHIEDKISDLTLHEQAK
YAIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEEEEFSSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEETGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRIKTQVSRPPAAGRFSAS
VSHAAFEESGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcagaattactcgatggcttaaatgataaacaacgcgatgccgttgcagcg
ccattacaaaacatgctggtattagcaggagcaggttcaggtaaaactcgagtattggtt
catcgtattgcctggttaatgcaagtagagcaagcctctgcctatagtatttttgcggta
acctttactaataaagccgctaaagaaatgcgctcacgggttgaagaaacattaaaagcc
cctgtaggcggcatgtggattggtactttccatggtttatcgcaccgaattttgcgtgca
catcaccgtgaagcaaacttaccagaagcctttcaaattttagactctgacgatcagctt
cgtatgatcaagcgcttattaaaatcgatgaatattgatgataaaaaatggccggcaaag
cagtttggttggtacataagcgctaaaaaagatgaagctctgcgccctaaagatattcag
gcatacgatattaacgagcaaatgatgctgcgtgtttacgcggcctatcaagaagcttgt
gatagagcgggcctagttgattttgcagaaatattactacgtagctatgaggttcttaaa
aataacccaaccttgctgcgtcattatcagcagcgctttgcgcacatgcttgtagacgag
tttcaagataccaatactattcagtatgcgtggttaaaactacttgcgggcgataccagc
agcatcatgattgtaggcgatgatgaccaaagtatttatggttggcgcggcgcaaaaata
gaaaacattaaacgctttttaaccgattttgatgcagagacgattcgccttgagcaaaac
tatcgctcgactgccactattcttaaagcctcaaacgcgttaattcaaaataactccgag
cgaatgggtaaaagtttatggaccgatggtaacgacggtgaacctatttctatttatgct
gcttttaatgagctagatgaagcgcgctttgtgagtagcaaattacgtagctggcttaat
gcgggtaatgcacttcaagatgcggctattttatatcgtagtaatgcgcaatcgcgggta
cttgaagaagcaatgctacaagaaggtttaaaataccgaatttatggcggtatgcgattc
ttcgaacgccaagaaattaaagatgctctttcatacttacgcttagtgggtaaccgccaa
gatgatgcggcatttgagcgtgttattaatacgcccgcccgcggcattggcgataaaaca
ttaagccatatacgtgactgcgctcgcgctgaatctttgccgctttggtatgctgctaaa
gccattgtagagcaacagcatttatcgggtcgcgcttctggagctgttgccaagtttgtt
gagttaattgaacatattgaagataagattagtgacttaacgctgcacgagcaggctaaa
tatgccattcaaacctcagggttaatggcaatgtatcaggctgaaaaaggtgaaaaaggc
cgtgctcgggttgaaaacttagaagaattaattagcgcctgcgatcaatatgaactccct
gaagaggaagaattcagttcaccactacaaggctttttagcctacacctcgcttgaatca
ggtgaagggcaagctgatgaacatgaagatgcggtacaaatgatgacgcttcactcagct
aaaggcttagagtttccgctggtatttatggtcggtgttgaagagggcatgttcccatca
caacaaagtaatgaagaaacgggccgtttagaagaagaacgccgcctttgttatgtaggt
atgacccgtgctatggataaactgtatataagccacgcagaaagccgccgtttatatggt
caagaaaaataccacagcccatcgcgttttttacgtgaaatacccgaagactgcgtagaa
gaaattcgcattaaaacccaggtttctcgcccgccagcagctggtcgctttagtgcatcg
gttagccatgccgcctttgaagaaagcgggtttaatttaggtcaacgggtgctacatgca
aaatttggcattggtacggtgcttaattacgaaggcagtggcgcacaatcgcgagtacaa
gttaactttgacgacttaggtagtaagtggttagtaacagcttatgcaagactacaagcc
gtttaa
DBGET
integrated database retrieval system
