Pseudoalteromonas sp. SM9913: PSM_A0238
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Entry
PSM_A0238 CDS
T01374
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSM_A0238 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psm03021
]
PSM_A0238 (rpoC)
03400 DNA repair and recombination proteins [BR:
psm03400
]
PSM_A0238 (rpoC)
Enzymes [BR:
psm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSM_A0238 (rpoC)
Transcription machinery [BR:
psm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSM_A0238 (rpoC)
DNA repair and recombination proteins [BR:
psm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSM_A0238 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ADT67193
LinkDB
All DBs
Position
I:256001..260173
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRELDLAQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGAVFKDPKEAEKAYRSG
NADLHAIVKVRISQSVKNEEGVVEDTVTVIDTTVGRAILSLILPKGMPYESINQALGKKQ
ISGLINECYRRLGLKDTVMFADQIMYTGFHYAMKSGVSIGIDDLVIPPVKAAIIESAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAKGEEVEQPSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEDVVIPGTNTVLVERNIMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCAKCYG
RDLARGHIINAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKTNGTLKL
HNAKYVLNTDGKIVITSRSTEITIIDSYGREKERYKVPYGAVLTVQDNAEVQGNDIVATW
DPHSHPIVLEHKSKVSFSDIDDSNTEAQTDELTGLTRVVVKDLAKANAKEPKLIIESDER
GLQETRLPSFTTIEVTDGATANPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEITGTISFGKETKGKKRLVITPAEGDHYEEMIPKWRQLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCIILDGGDTEFL
AGEQIEVARVNIANRDLEAQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTEA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQERMARRKQKDVVEEQTVSAEEATQALTD
ALNADLSGNQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcaccagacatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagactattaactaccgtactttcaagcctgagcgcgatggcttattctgtgcccgt
attttcggcccagtgaaagattatgagtgtttatgtggtaaatataaacgccttaaacac
cgtggtgtgatctgtgaaaagtgtggcgttgaagtaacactcactaaagtgcgtcgtgac
cgtatgggtcatatagaactggcaagtccagttgcgcatatatggtttttaaaatcatta
ccgtcacgtatcggcttaatgcttgatatgacgcttcgtgatattgaacgtgttctttac
ttcgaatcattcgtagtaactgagcctggcatgacaacgcttgagcgtggtcagctatta
ggtgaagaagaatacctagatgcacttgaagagcacggtgatgaatttgaagcgaagatg
ggtgctgaagcagtattagacttactgcgtgaactcgatcttgctcaattaattgcagaa
atgcgtgaagagttaccaacaattaactctgaaactaagcgtaaaaagatcactaaacgt
cttaagttaatggaatcgttccaccaatcaggtaataaccctgagtggatgatcatgaca
gtacttccagtattgccacctgacttacgcccgttagtgccactagacggtggtcgtttt
gcgacatctgatctaaatgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctactagatttagctgcaccagatattatcgtacgcaacgaaaaacgtatgttacaa
gaagcggttgatgcgctacttgataacggtcgtcgtggtcgtgcaattacaggttctaat
aaacgtcctcttaaatcgcttgctgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttacttggtaagcgtgtagattactctggccgttctgtaatcacggttggtcctaca
cttaagcttcatcagtgtggtcttcctaagaagatggcattagagcttttcaaaccattc
atctatggcaaattagagcgtcgtggcatggctacgacaatcaaagctgctaaaaagatg
gttgagcgtgaagtagcggaagtatgggatgtactagacgaagtaattcgtgaacatcca
gtattacttaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaacctgtg
cttatcgaaggtaaagcgattcatttgcacccattagtatgtgcggcgtacaacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgctaacaattgaagcgcaacttgaagct
cgcgcgttaatgatgtctacaaacaacatcttatcgcctgctaatggtgagccaatcatc
gttccttcacaggacgttgtattaggtctttattacatgacgcgtgatcgtattaacgcg
aaaggcgaaggcgccgtatttaaagatcctaaagaagcagaaaaagcataccgtagtggt
aatgccgaccttcacgctatcgtgaaagtacgtattagccaatcagttaaaaacgaagaa
ggtgttgttgaagacactgtaaccgtaattgatactactgttggtcgtgcgattctgtct
ttaattttaccaaaaggcatgccgtatgagtcaatcaaccaagccttaggtaaaaagcag
atttctggcttaattaatgagtgttaccgtcgtcttggtctaaaagacacagttatgttt
gctgaccaaatcatgtacaccggtttccactatgcaatgaagtcaggtgtttcaattggt
atcgatgacttagttatcccaccagttaaagcagcaatcattgaatcagctgaagctgaa
gtaactgaaatcaaccaacaattccaatcaggtcttgtaacggctggtgaaaagtacaac
aaagttatcgatatctggtcacgtgtaaatgaaaacttatcacgtgaaatgatggccaac
ttgtcaaaagacacggttatcaatgcaaaaggtgaagaagtagagcaaccgtcatttaac
tcagtgtttatgatggccgactcaggtgctcgtggtagtgccgctcagatccgtcagcta
gcaggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacgccaatcacc
gctaacttccgtgaaggtctaaacgtacttcagtacttcatctcaacgcacggtgcgcgt
aaaggtcttgccgatacagcactgaaaacagcaaactcgggttacttaacgcgtcgtcta
gtagacgttgcacaagatttggtaatcaatgaagacgattgtggcacagaagatggctta
acaatgaaaccgctaattgaaggtggtgacgttgtagaagcacttcgcgaacgtgtacta
ggtcgtgttgttgctgaagatgttgtaataccaggtactaatacagtacttgttgaacgt
aacatcatgcttgacgaaaaactgtgtgaccttttagaagagcactcagttgatgaagtt
cgcgtacgttcagttatcacttgtgataacgactttggtgtatgtgctaagtgttatggt
cgtgaccttgcacgtggtcatatcatcaacgcgggtgaatcagtaggtgttatcgcagct
caatcaatcggtgagccgggtacacagcttacgatgcgtactttccacatcggtggtgcg
gcatcaagagcgtctgctgaaaataatgtacaagttaaaacaaacggtacattaaaactt
cacaacgctaaatatgtattaaatacagacggtaagattgttattacctctcgttctacc
gagatcactatcattgatagctatggtcgtgagaaagagcgttataaagtaccttacggt
gcggtattaacagtgcaagacaatgcagaagttcaaggtaacgacatcgttgctacttgg
gacccgcatagtcacccaatcgttcttgagcataaatcaaaagtatcgttcagcgatatc
gatgattcaaacactgaagcacagactgacgaactaacgggtttaactcgtgtagttgtt
aaagatcttgctaaagcgaatgcgaaagagccaaagcttatcattgaaagtgatgagcgt
ggattacaagaaacgcgtcttccttcattcactacgattgaagtaacagacggcgcgact
gcaaacccaggtgacgtattagcacgtattccgcaagaaggttcgaaaactcgtgatatc
acgggtggtctaccacgcgtagccgacttatttgaagcacgtaagccgaaagatccagct
atcttagctgaaatcaccggtacgattagcttcggtaaagagactaaaggtaagaaacgt
ttagttattacaccagctgaaggcgatcattacgaagaaatgattcctaagtggcgtcaa
cttaacgtgtttgaaggtgaacaagtgtctaaaggtgaagttatcgccgatggtccagaa
tcaccgcatgacatcttacgcctacgtggtgtgactcatgttgctaattacattgttaac
gaagtgcaagaggtttaccgtttgcagggcgttaagatcaatgataagcacattgaaact
attattcgtcaaatgctacgtaaatgtatcattctagacggtggtgatactgagttctta
gccggtgagcaaattgaagtggcacgcgttaatatcgcaaaccgcgaccttgaagctcaa
ggtaagatcccagctaagtttgaaatccagttaatgggtatcacaaaagcatcactagcg
acagaatctttcatctcagcagcctcgttccaggagacaactcgtgtcctaacagaagcc
gctgtaaatggtaagagcgatgaactacgcggtctgaaagaaaacgtaattgtgggtcga
ttgatcccagccggtaccggttttgcgtatcatcaagagcgtatggctcgtcgtaagcaa
aaagacgttgttgaagagcaaacggtaagtgcggaagaggcaactcaagcactcactgat
gctttaaacgcggatttatctggaaatcaataa
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