Pseudoalteromonas sp. SM9913: PSM_A0400
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Entry
PSM_A0400 CDS
T01374
Symbol
rpoN
Name
(GenBank) sigma N (sigma 54) factor of RNA polymerase
KO
K03092
RNA polymerase sigma-54 factor
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm02020
Two-component system
psm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PSM_A0400 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSM_A0400 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psm03021
]
PSM_A0400 (rpoN)
Transcription machinery [BR:
psm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSM_A0400 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ADT67354
LinkDB
All DBs
Position
I:complement(430826..432283)
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AA seq
485 aa
AA seq
DB search
MTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEHDYSEDTAGKNEQKADNDDITLS
ASADDKPSEYEQDSGEAMTKDTISDDMAMDVTWDEYMSAAPASSSGPMPEDESIYQGSST
ETLHEYLMWQLQLTPFSPTDEAIAIAIVEAVDDSGILTLSCEEILESFNQENDGEDEVEL
DEIEAVLKRIQLFDPVGIAARSLQECLCIQLNQFDKDTPFLNETKMILTDHIDLLAARDY
RTLMKKTKLKEDELKEIMTLIHTLSPKPADTIVREESEYVIPDVSVKKVKGRWVVELNPD
SMPKIRVNSQYAAMSRTVKSSGDSQFIRSHLQEAKWFIKSLESRNDTLLKVTNCIVQQQQ
AFFEHGPEAMKPMVLNDVAEMVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTENG
GECSSTAIRALIKKLIAAENSAKPLSDSKIADILAEQGIKVARRTIAKYRESLAIPPSNQ
RKSLI
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgactccacagttgcaacaagcaattcgcttattgcaactcagtacattggatctccag
caagaaattcaagaagcgctcgatagcaaccccttgcttgaagttgaagaacacgattac
agcgaagacactgcaggtaaaaacgaacaaaaagccgataacgatgacataacgctaagt
gcctcagctgacgataaacctagcgagtatgagcaagatagcggcgaagcaatgaccaaa
gacactattagcgatgatatggctatggatgttacttgggatgaatatatgagcgctgcg
cctgcctcttcatcgggcccaatgccagaagatgaatctatttatcaaggctcttcgact
gaaacgctgcatgagtatttaatgtggcaacttcaactgacgccgtttagtcctaccgat
gaagcgatagctattgcaattgtagaagctgtagacgactcagggattctaacccttagc
tgtgaagaaatattagaaagctttaaccaagaaaacgacggcgaagatgaagttgaactt
gacgaaatagaagcggtactaaagcgtattcaactatttgatccagtgggaatagccgcg
cgtagtttacaagagtgcttgtgtattcagctaaatcaatttgataaagacacacctttt
ttaaacgaaacaaaaatgatcttaaccgatcatattgatttacttgctgcacgtgactat
cgcacgttaatgaaaaaaacaaagcttaaagaagatgagcttaaagaaatcatgacgttg
attcatacgctcagcccaaaaccggcagacactattgtcagagaagagtctgaatacgtt
attcctgatgtgtcggttaaaaaagttaaaggtcgttgggtagttgaattaaacccagat
agcatgcctaagatcagagtaaatagccaatatgcagctatgtcgcgtacggttaaatca
agtggtgatagccagtttattcgctcgcacttacaagaggctaaatggtttataaaaagc
ttagaaagtagaaatgacacgctacttaaagtaaccaactgtattgtgcagcagcaacag
gccttttttgaacacggtcctgaggctatgaagcctatggtgcttaacgatgtggctgaa
atggtggaaatgcatgagtcgactatatcgcgtgttactacgcaaaaatacatgcataca
ccacgtggcatttttgagcttaaatatttcttttcaagccatgtaagtactgaaaatggt
ggcgaatgttcatcaacagcaatacgtgcattaattaaaaaattaatcgctgcagaaaac
tcagctaaaccattgagtgatagtaaaattgcagatatattggcagagcaaggaattaaa
gtagcgaggagaaccattgcaaaatatcgcgaatctctagctattcccccgtctaatcaa
cgtaaaagtttgatttaa
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