Pseudoalteromonas sp. SM9913: PSM_A1118
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Entry
PSM_A1118 CDS
T01374
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM_A1118 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psm03019
]
PSM_A1118 (rhlE)
Enzymes [BR:
psm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSM_A1118 (rhlE)
Messenger RNA biogenesis [BR:
psm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSM_A1118 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADT68061
LinkDB
All DBs
Position
I:1186322..1187719
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AA seq
465 aa
AA seq
DB search
MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLI
ERLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL
RKGVDILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ
NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHLIRS
NNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIER
FIGELIPRAEEEGFEPANPVAERALDARPLPAKKPKKKQPFNKPKSDSSKPNSKKPNNGG
NGTGPRRGGSKKPAAKTDENAQNPWAKRQSVGGTGQRRRRPANND
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgatggtttaggtttatcacagtctttagttaatgcggttttagaaaagggc
tatgaaacgccaacgcctattcaggctcaagctatcccagcaattattgcgcgtcgcgat
gtaatggccgcagcacaaacaggtaccggtaaaaccgctggttttactttgccactaatt
gagcgtttatcgtcgggcactaaagcaaaaagtaatcatgtacgtgcgcttattttaacg
ccaacccgagagcttgcgttgcaagtaagcgaaaacgttgaagaatacgctaagcattct
gatgtgagttcgtttgtggtttacggtggtgtaaaaattaacccacaaatgcagcgcctg
cgtaaaggggttgatattttagtggccacacctgggcgtttaattgatttacacaatcaa
aacgcggttaaatttgatagcattgaagtactggttttagatgaagccgaccgtatgtta
gacatgggctttatccacgacattaaacgcttaattgcaaaaatgcctgaaaaacgtcaa
aacttaatgttctcagcaaccttttctgacgacattcgtgcattggccaaagggttaatt
aacgatccggttgaaatttcagtcgctgccaaaaacacgactgctaaaagcgtgactcaa
tgcgtgtacgcagtagataaagcgcgtaaaacggccttattaagccatttaattcgtagc
aacaattggcaacaagtactggtatttagccgtactaaacacggtgctaaccgtttagtt
aagcaactggaacgtgatgatattgttggcgcagcaatccatggtaataaatctcagggc
gcacgtgttaaagcattggaaggctttaaaagtggtgaagtgcgcgtattagtggcaacc
gatattgttgcccgtggtttagatattgttgagcttccacacgtagttaactacgactta
cctaatgtatatgaagattatgttcaccgtattggccgaactggtcgtgcgggtgcatca
gggcatgccatttcgtttgtaacggtcgacgatgcagtggatttatacggtattgaacgc
tttattggcgagttaattcctcgtgctgaagaagaaggctttgaaccggctaaccctgtt
gctgagcgcgccctcgatgctcgcccactgcctgctaaaaagccaaagaaaaaacaacca
tttaataagcctaaatctgatagcagcaaacctaatagcaaaaagcctaacaatggtggc
aatggtacaggcccacgtcgtggtggttctaaaaagccagcagcaaaaacagacgagaat
gcacaaaacccttgggcaaaacgccaatcggtagggggcactggtcagcgccgtcgtcgt
ccagcaaataacgactaa
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