Pseudoalteromonas sp. SM9913: PSM_A1153
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Entry
PSM_A1153 CDS
T01374
Name
(GenBank) sigma-54 dependent transcriptional regulator/sensory box protein
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
psm
Pseudoalteromonas sp. SM9913
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psm03000
]
PSM_A1153
Transcription factors [BR:
psm03000
]
Prokaryotic type
Helix-turn-helix
Other families
PSM_A1153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS
PAS_9
AAA_5
PAS_4
Mg_chelatase
AAA_16
AAA
PAS_3
AAA_3
AAA_22
AAA_2
bpMoxR
PAS_7
HTH_8
AAA_7
AAA_19
PAS_8
MCM
nSTAND3
AAA_PrkA
Motif
Other DBs
NCBI-ProteinID:
ADT68095
LinkDB
All DBs
Position
I:1230264..1231682
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AA seq
472 aa
AA seq
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MIKNFLNDPTLLLNAVGEGIYGFDLSGNAVFVNPAAERMTGWTADELLGKKIHQYHHHSH
ADGTPYPADECQIYCTMFDGKRREVKNEVFWRKDGSAFAVEYTSTPVYKNSQLIGAVAVF
RDISAQQRTQTALQDALAQVKHLSEQLKDENDYLTAELNQDWQDSGLVGRSDVFQRMLQQ
IQLVSETDSTVLILGENGTGKELVARNLHRLSKRNEQAFIKVNCAAFTPSLLESELFGHE
RGSFTGANERRKGRFELADKGTLFLDEVAELPLESQSKLLRVLQEREFERVGGSQTLKVD
IRIIAATNRNLWEMVQAGQFRMDLYYRLNVFPIKVPALKERKEDIPFLCQNLIAQINKRL
GKQLQGLSKKAIRQLQAYDWPGNIRELQNVLEREAILSTQPTLQLSQPLKAGDANAVNPT
LTLDEAQRQHIISVLMLCNWKIAGEQGAANKLGLPESTLRSKMRKLAVQRTR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaaactttttaaacgatcctactttattacttaatgcggtaggtgagggcata
tatggatttgatttatctggtaatgcggtgtttgtaaacccagcggcagagcgaatgacg
ggttggacagccgatgaattgctgggtaaaaaaatacatcaatatcatcatcacagtcat
gcagatggcacgccttaccctgccgatgaatgccaaatttactgcaccatgtttgatggc
aaacgccgcgaggttaaaaacgaagtattttggcgtaaagatggcagcgcctttgctgtt
gaatatacctccacgcctgtttataaaaatagccagcttattggtgccgtggccgttttt
cgcgatatatcagcgcagcagcgaacccaaaccgcgctccaagatgctttagcgcaagta
aagcatttaagcgagcagctcaaagatgaaaacgactaccttactgccgagctaaatcaa
gattggcaagactcggggctagtagggcgcagtgatgtatttcaacgtatgttgcagcaa
atacagttagtgagcgaaaccgacagtacggtgttgatacttggcgaaaacggtactggc
aaagagctggtggcgcgtaacttacatagattaagcaagcgcaatgagcaggcgtttata
aaagttaattgtgcggcgtttacccctagcttattagaatcggagttgtttggacacgaa
cgaggctcgtttaccggcgcaaatgagcgacgtaaagggcgttttgaacttgctgataag
ggcactttatttttagatgaagtggcagagctgccgttagagtcacaaagtaaattatta
cgagtattacaagagcgcgaatttgagcgagtagggggcagccaaactctaaaagtcgat
attcgtatcattgctgcaaccaatcgtaacttgtgggaaatggtacaagcagggcagttt
agaatggacttatactaccgtttgaacgtgtttcctatcaaagtgccagcactaaaagag
cgaaaagaagatataccttttttatgtcaaaacttaattgctcaaataaacaagcggcta
ggtaagcaattacaggggttaagtaagaaagctattaggcaactacaagcctatgactgg
ccaggcaatatcagagagctgcaaaacgtgttagagagagaagctattttatctacacag
cccacactgcagttaagtcagccgctaaaagccggtgatgcgaatgccgttaacccaacg
cttacactggatgaggcgcaaagacagcatattatctccgtactgatgttatgtaactgg
aaaattgcaggcgaacaaggcgcggcaaataagctgggcttacctgagagtacgcttcgc
tcaaaaatgcgaaaattggcagtgcaacgcacacgttaa
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