Pseudoalteromonas sp. SM9913: PSM_A1226
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Entry
PSM_A1226 CDS
T01374
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSM_A1226 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psm03400
]
PSM_A1226 (mfd)
Enzymes [BR:
psm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSM_A1226 (mfd)
DNA repair and recombination proteins [BR:
psm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSM_A1226 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADT68166
LinkDB
All DBs
Position
I:complement(1318430..1321903)
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AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGELLGSGLSIAIAQGVKQQDNLVLIVTPDTPSALRLETE
LEYLLPDNPVMIFPDWETLPYDHFSPHQDIISARLATLNTLKNEQQSVLIMPVSTLMLRT
APASFIYGSTLNFKVGDRLDTHALRENLEQAGYMHVQQVMEHGEYAIRGSIVDLYPMGSK
HPFRLDFFDDELDTIRLFDVETQRSDEKVEKIELLPAHEFPTNDTDIERFRINYREKFGA
SAEQDSVYMQVSKGNWPGGIEYYMPLFFDGLATIFDYLPESTTVMQLGDLEHAADNFWHD
VNVRYENRRVDPLRPLLPPDELYQPINELFSNLGNYGRIRLSQAKLGTKAGNKNLAVNEL
PNVRIDHKQHEPYNAFISYVAEQKKKKGRVVISVESDGRRESLLSILKPSGLKFKEFDTF
EQFTNSSSDVGLIVSPLEQSVVLSTKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPVVHLDHGVGRYQGLQTIDAAGVVTEFVTIIYAGEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWDKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDGQAYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAILVPTTLLAQQHYDNFKDRFADFPIEVGVLSRFNSTKEQKETLEKMSNGKLDVVIGTH
KLIQQDINFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDEELIREAVLREIKRGGQVYFLHNNVETIERVAQEISE
WVPEATVTSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGNPKALSKDAKKRLDAIASLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFNLYMEMLEQAVNALKNGQEPTLENLLQKQTEVDLKLPAL
LPDDYIHDVNARLGMYKRVASCANLADIDELQVELIDRFGLLPDAAKNLFSLQQLKMQAS
NLGITKIEANPKGGYFEFSQNTKVNPSFIIGLIQSAPHIYKMDGANKLRFAISEANARER
LKMITAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccttgggtaaaatctcaaaaagataaaattcaa
tggggcgagcttttaggcagtggcttgagcattgccattgcacaaggtgtaaaacaacaa
gataacttagtgttaatagttacgccagatacaccaagtgctttgcgccttgaaaccgaa
ttagagtatttgcttccggataacccggtaatgatatttccggattgggagacattgcct
tatgatcatttctctccccatcaagatattatttcagcgcgcttagcaacgcttaatacc
ctgaaaaacgagcaacaaagcgtgctcattatgcctgtatcaacgctgatgctgcgcacg
gccccagcttcgtttatatacggttcaacgcttaattttaaagtgggcgatagattagac
acccacgctttgcgtgaaaacttagagcaagcgggttacatgcacgtgcaacaagttatg
gagcatggcgaatatgcaatacgtggctctattgttgatttatacccgatgggcagtaaa
cacccatttaggctcgatttttttgatgacgagcttgataccattcgcttatttgatgtg
gaaacacaacgctcagatgaaaaagtagaaaaaattgagttacttcctgcccatgaattc
cccactaacgacacggatattgaacgctttagaataaactatcgtgaaaagtttggcgca
agcgcagagcaagactctgtctatatgcaagttagtaaaggtaattggcctggaggtatt
gaatactacatgccattattttttgatggcttggcgactatttttgactatttgcctgaa
tcaacgaccgtgatgcaattaggcgatttagaacatgcggcggataacttttggcacgat
gttaatgtacgctatgaaaaccgccgtgtggaccccttgcgcccacttttaccaccggat
gaattgtaccagccaatcaatgagctattttcaaacttaggtaattatggccgcattcgt
ttatcgcaagcaaaattgggcactaaagcgggcaataaaaaccttgccgttaatgaatta
cccaatgtccgcattgatcataaacaacatgaaccttacaacgcattcattagctatgtg
gcagagcaaaaaaagaaaaaaggccgagttgtcattagtgttgagtcggatggtcgacgt
gaatcattactgagtatattaaaacccagcggcttaaaatttaaagagtttgatactttt
gagcaatttaccaacagcagtagtgacgttggtttaattgtaagcccacttgaacaaagt
gtcgtgcttagcacaaaacctagcctgagcattattactgagcaagaattgcttggaatt
aaagtatcacaacgcagacgccgtaagcacaagtatgaagcaagccaagatgcgctaatt
cgtaacttagcagagttaaaagaaggccaaccggttgtgcaccttgaccatggtgttggc
cgttatcaaggactgcaaacaattgatgctgccggtgtggttactgaatttgtaaccatt
atttatgccggtgaagcaaagctctatgtgccggtatcagcgcttcatatgcttagccgt
tactctggcggtgaagaagccagtgccccactgcataagctcggctctgatgcgtgggat
aaggcaaaaaaacgcgccgctgaaaaagtacgcgatgtcgctgctgaattgctcgatatc
tacgctcagcgccaagcaaagccgggtaataaatttacgctggatggccaagcttatcgt
caatttagtgatagcttcccgtttgaagaaacggatgatcaacgtaacgctattgaagct
gtactgggtgatatgcaatcaaaacaagccatggatcgcttagtctgtggtgatgtaggc
tttggtaaaaccgaagtagccatgcgtgcagcgtttgttgcggttaacgataataagcag
gtggctattttagtccctaccaccctacttgctcaacaacactacgataactttaaagac
cgctttgctgattttccaattgaagtgggtgtattgtctcggtttaactcgaccaaagag
caaaaagaaacccttgaaaagatgagtaatggcaagcttgatgttgtcattggcacgcat
aaactaattcaacaagacatcaattttaaagacttaggcctgttaattgttgatgaagaa
caccgatttggggtgcgccaaaaagaaaaaattaaagccctgagagctgatgttgacata
ctcaccctgaccgcaacccctatcccccgtactttaaatatggccatgagtggtatgcgc
gatttatctattattgctaccccaccggctaaacgcttagctgttaaaacttttgtgcgc
caacgcgacgaagagcttattcgcgaagcggtactgcgtgagattaaacgcggcggccag
gtgtactttttacacaacaatgtagaaaccattgagcgtgttgctcaagaaattagcgaa
tgggtgcctgaggcaacagttacctcagcccacgggcaaatgcgagagcaagagcttgag
cagatcatgaccgatttttatcaccaaaaatacaatgtactggtatgtactacgattatt
gaaaccggcattgatgtacccacagcaaatactattattatggacagagccgataaactc
ggtcttgctcagctgcatcaattacgcggacgtgttggtagaagtcatcaccaagcctat
gcttatttactcacaggtaaccctaaagcgctctctaaagatgcgaaaaagcgtttagat
gccattgcctcattagaagatttaggcgcaggctttgccttagcaacccacgatttagaa
attcgtggtgccggtgagctattaggagacgatcaatctggacaaatgcaaaccattggc
tttaatttatacatggaaatgcttgaacaggctgttaacgcgcttaaaaatggtcaagag
ccaacccttgaaaatttattacaaaaacaaaccgaagttgatttaaagctacctgccttg
ttacctgatgattatattcatgatgttaacgcgcgtttaggtatgtacaagcgtgtagca
agttgtgctaaccttgctgatattgatgaactgcaagtagaattgatagatcgatttggt
ttattacctgatgcagctaaaaacctatttagtttacaacaactaaaaatgcaggcgagc
aatttgggcataaccaaaatagaagctaacccgaaaggaggctactttgagttcagtcaa
aataccaaggttaatcctagcttcattattggtttgatacaaagtgcgccacacatttat
aaaatggatggcgcaaataaattacgctttgccattagcgaggcgaatgcccgtgaacgc
ttaaaaatgatcactgctatgattgcagatttcgaaaaaaaggttagccattaa
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