KEGG   Pseudoalteromonas sp. SM9913: PSM_A2422
Entry
PSM_A2422         CDS       T01374                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
psm  Pseudoalteromonas sp. SM9913
Pathway
psm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSM_A2422
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psm03019]
    PSM_A2422
Enzymes [BR:psm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PSM_A2422
Messenger RNA biogenesis [BR:psm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PSM_A2422
SSDB
Motif
Pfam: DEAD Helicase_C ResIII P-loop_SecA ERCC3_RAD25_C SWI2_SNF2 AAA_22
Other DBs
NCBI-ProteinID: ADT69336
LinkDB
Position
I:complement(2582516..2583763)
AA seq 415 aa
MSATSFSSLALDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVL
PLLHKLLNTTKKDEPGIARVVILTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQ
IKALKTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPG
DRQTLLFSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHM
IGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVL
VATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE
IEVLLDTRLAPQWLEGYEPDLNKPPKDNRKNTNKARKDRDKKRITGQRAPNRRRK
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgtctgccacatcgttctcatcactagccctagacccgttactattaacggcaatagag
caaaataattacactacgcctaccgccattcagcacaaaacgataccgccaattttagcg
ggcaaagacgttatgggcagcgctcaaactggtactggtaaaacagccgcttttgttttg
ccgctattacataagcttttaaataccactaaaaaagacgaaccaggcattgctcgtgtg
gttattttaacgcccactagagagcttgctcagcaagtattcgctagttttgaaaaatac
gcacaaggtacagatataaaaggtgcacttgcttatggtggcgcaagcattggcccacaa
atcaaagcacttaaaacagcgcaagtaatagtggcaacgccagggcgcttgcttgatcat
atagtgaagggcagtgtggtgctttcaagcgtggactctttggtatttgatgaagcagac
cgtatgcttgatatgggttttattgacgaaattagacgaatactgcgtcatatcccaggc
gatcgtcaaaccttactgttttccgccacctttgatgacagtgtatttgagctaagtaaa
aaattgctcaaagaccctgaacttattgaagtcgataagcgcaactctgctgctgtagag
gttgaacaagttatttacgcagtagatgaagacagaaagcgcgaactggtatcgcacatg
attggcatgaaaaactggcgccaagtgcttatattcacccgcacaaaacaaatggccgat
aaacttgctaaagaaatgtgtaaagatggtttaaaaaccgaatctattcatggtgataaa
tcacaaggtgctcgcgaccgagctctccataacttcaaagagggcagtacacgtgtttta
gtagccactgatgtagctgcgcgcggtttagacataccggcacttaaatacgtaattaac
tttgaattgccatacatagctgaagactatgtgcatcgtattggccgtacaggacgagct
ggcgagcaaggccttgcaatgtcattagtgagcttagatgagcaatggctgcttgaagaa
attgaagtactgctggatacgcgtttagcaccacagtggcttgaaggttatgaacctgat
ttaaataagccacctaaagataaccgcaaaaacaccaacaaagcgcgtaaagatcgcgat
aaaaaacgtattacagggcaaagagcgccaaatagaagacgtaaataa

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