Pseudoalteromonas sp. SM9913: PSM_A2422
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Entry
PSM_A2422 CDS
T01374
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM_A2422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psm03019
]
PSM_A2422
Enzymes [BR:
psm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSM_A2422
Messenger RNA biogenesis [BR:
psm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSM_A2422
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADT69336
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All DBs
Position
I:complement(2582516..2583763)
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AA seq
415 aa
AA seq
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MSATSFSSLALDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVL
PLLHKLLNTTKKDEPGIARVVILTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQ
IKALKTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPG
DRQTLLFSATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHM
IGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVL
VATDVAARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE
IEVLLDTRLAPQWLEGYEPDLNKPPKDNRKNTNKARKDRDKKRITGQRAPNRRRK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacatcgttctcatcactagccctagacccgttactattaacggcaatagag
caaaataattacactacgcctaccgccattcagcacaaaacgataccgccaattttagcg
ggcaaagacgttatgggcagcgctcaaactggtactggtaaaacagccgcttttgttttg
ccgctattacataagcttttaaataccactaaaaaagacgaaccaggcattgctcgtgtg
gttattttaacgcccactagagagcttgctcagcaagtattcgctagttttgaaaaatac
gcacaaggtacagatataaaaggtgcacttgcttatggtggcgcaagcattggcccacaa
atcaaagcacttaaaacagcgcaagtaatagtggcaacgccagggcgcttgcttgatcat
atagtgaagggcagtgtggtgctttcaagcgtggactctttggtatttgatgaagcagac
cgtatgcttgatatgggttttattgacgaaattagacgaatactgcgtcatatcccaggc
gatcgtcaaaccttactgttttccgccacctttgatgacagtgtatttgagctaagtaaa
aaattgctcaaagaccctgaacttattgaagtcgataagcgcaactctgctgctgtagag
gttgaacaagttatttacgcagtagatgaagacagaaagcgcgaactggtatcgcacatg
attggcatgaaaaactggcgccaagtgcttatattcacccgcacaaaacaaatggccgat
aaacttgctaaagaaatgtgtaaagatggtttaaaaaccgaatctattcatggtgataaa
tcacaaggtgctcgcgaccgagctctccataacttcaaagagggcagtacacgtgtttta
gtagccactgatgtagctgcgcgcggtttagacataccggcacttaaatacgtaattaac
tttgaattgccatacatagctgaagactatgtgcatcgtattggccgtacaggacgagct
ggcgagcaaggccttgcaatgtcattagtgagcttagatgagcaatggctgcttgaagaa
attgaagtactgctggatacgcgtttagcaccacagtggcttgaaggttatgaacctgat
ttaaataagccacctaaagataaccgcaaaaacaccaacaaagcgcgtaaagatcgcgat
aaaaaacgtattacagggcaaagagcgccaaatagaagacgtaaataa
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