Pseudoalteromonas sp. SM9913: PSM_B0538
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Entry
PSM_B0538 CDS
T01374
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta (NS1) (HU-1)
KO
K03530
DNA-binding protein HU-beta
Organism
psm
Pseudoalteromonas sp. SM9913
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psm03032
]
PSM_B0538 (hupB)
03036 Chromosome and associated proteins [BR:
psm03036
]
PSM_B0538 (hupB)
03400 DNA repair and recombination proteins [BR:
psm03400
]
PSM_B0538 (hupB)
DNA replication proteins [BR:
psm03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PSM_B0538 (hupB)
Chromosome and associated proteins [BR:
psm03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PSM_B0538 (hupB)
DNA repair and recombination proteins [BR:
psm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PSM_B0538 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-DNA_bdg
UBA_HYPK
Motif
Other DBs
NCBI-ProteinID:
ADT70575
LinkDB
All DBs
Position
II:591686..591961
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AA seq
91 aa
AA seq
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MNKAQLVEKISTDAEISKAAATRALDAFTGAVTSSLKEGNSVALVGFGTFSVKERAARTG
RNPQTGAEIQISAATIPSFKPGKGLKDQVNL
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagctcaactagttgaaaaaatctctactgacgcagaaatctctaaagcagcc
gctacacgtgcacttgatgcattcacaggcgctgtaacttcttcactaaaagaaggcaac
tctgttgcattagttggttttggtactttttcagttaaagaacgtgctgctcgcacaggt
cgtaacccacaaacaggtgcagaaatccaaatttcagcagcgactattccaagctttaaa
ccaggtaaaggtcttaaagaccaagtaaacctataa
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