Entry |
|
Symbol |
rnd
|
Name |
(GenBank) putative RNase D, processing tRNA precursors
|
KO |
|
Organism |
psm Pseudoalteromonas sp. SM9913
|
Brite |
KEGG Orthology (KO) [BR:psm00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:psm03016]
PSM_B0584 (rnd)
Enzymes [BR:psm01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PSM_B0584 (rnd)
Transfer RNA biogenesis [BR:psm03016]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSM_B0584 (rnd)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
II:643236..644366
|
AA seq |
376 aa
MHYQLIQTQNELNTFVEQIKNKPILAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE
LSLFDFWQILKDPKVLKVLHSPSEDIEVFQKYAGFVPYPLFDTQFALQLLGEGNCMGFAL
MVKTLLNIEIDKSESRTNWLQRPLTQKQLEYAAADTYHLLPCFELIIDSIKAADLFDIVI
NESELVANKRAFQIPDELLYKEIKNAWQLKPHELAVLKELAVWRRNKAIRKNLALNFVLK
EHNMTEIAKRGPSSLNALRQIPGVEPIEVNRSGVEILKCIEQAKAIPAEQHPQVLKRLID
FPTYKKVAKEIKQKITKVAKEHNIPEDVMASKKQINQLISWNWKLTAQQKEKHIKPDLLS
SWRYDFVKDALKEWDN |
NT seq |
1131 nt +upstreamnt +downstreamnt
gtgcactaccaattgatccaaacccaaaatgagcttaatacgtttgtagaacaaattaaa
aacaaacccattcttgctattgataccgagtttatgcgccgccgtactttgtatccagaa
gttgcacttattcaagtttatgatggtgaacatttagcgcttattgacccgcttgccgag
ctttccttgtttgatttttggcaaatacttaaagatcctaaagtgctaaaagtactccat
tcaccctcagaagatattgaagtttttcaaaagtacgcagggtttgttccttatccttta
ttcgatacccagtttgcacttcagctattaggtgagggaaactgtatgggctttgcctta
atggtgaaaacattattgaatattgagattgataaaagcgaatcgcgcactaattggtta
caacgcccccttacccaaaagcaacttgaatacgctgctgctgatacgtatcacctgctg
ccttgttttgagttaattatagatagcattaaagccgctgatttatttgatattgtgatc
aatgaaagtgaattagttgccaataaacgtgcttttcaaattccggatgaactactttac
aaagaaattaaaaatgcatggcaacttaagccgcatgaactagcggtacttaaagagtta
gcagtatggcgtcgaaataaagctattcgtaaaaatctagcgcttaattttgtgcttaaa
gagcacaatatgaccgaaattgccaaacgaggcccttcaagtttaaatgctctgagacaa
attcctggggtagaacccattgaagtgaatcgttctggggttgaaattttaaagtgtatt
gagcaggccaaagccattccagctgagcaacacccacaagtattaaagcggttaattgat
tttcctacctataaaaaagtagcgaaggagatcaaacaaaaaattactaaagttgctaaa
gagcataacattccagaagacgttatggcctctaaaaagcaaataaatcagctaattagt
tggaactggaagttaactgctcagcaaaaagaaaaacacataaaaccagatttactcagc
tcatggcgatatgattttgttaaagatgcgctaaaagagtgggataattag |