Pseudoalteromonas sp. MT33b: H3302_00710
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Entry
H3302_00710 CDS
T10969
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb03420
Nucleotide excision repair
psmb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3302_00710 (uvrD)
03430 Mismatch repair
H3302_00710 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmb03400
]
H3302_00710 (uvrD)
Enzymes [BR:
psmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3302_00710 (uvrD)
DNA repair and recombination proteins [BR:
psmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H3302_00710 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
H3302_00710 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
GREB1_2nd
DUF3553
Motif
Other DBs
NCBI-ProteinID:
QMW14676
LinkDB
All DBs
Position
1:complement(144756..146921)
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AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRSRVEETLKAPVGGMWIGTFHGLSHRILRAHHREAKLPESFQILDSDDQQ
RMIKRLLKAMNIDDKKWPAKQFSWYISAKKDEGLRPKDIQAYDINEQMMLKVYAAYQEAC
DRAGLVDFAEILLRCYEVLNNHPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGNTN
SIMIVGDDDQSIYGWRGARIENIKRFLTDFEAETIRLEQNYRSTATILKASNALIKNNAE
RMGKSLWTDGNEGEPISVYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRNNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARNESLPLWYAAKAIIEQQHLSGRAASAVTKFLELVEHIEDKISDLTLEEQAK
YAIQTSGLMAMYQAEKGEKGRARVENLEELISACGQYELPEDEEFSSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMEKLYISHAETRRLYGQEKYHSPSRFLREMPEDCVEEIRIKTQVSRPPAAGRFSSS
VTHAAFEDSGFNLGQRVLHAKFGVGTVLNYEGSGAQSRIQVNFDDLGSKWLVTQYARLQA
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgaattactcgatggcttaaatgacaaacaacgggatgcagtcgcagcc
ccattgcaaaatatgctagtacttgctggtgcaggttctggtaaaactcgagtacttgtt
catcgtatcgcatggctaatgcaagttgagcaagcctctgcctacagtatttttgcggtc
acctttaccaataaagctgcaaaagagatgcgctctcgcgtagaagaaaccttaaaagcg
cctgttggtggcatgtggattggcactttccacgggttgtctcaccgtattttgcgtgca
catcatcgtgaagcaaaattacctgaaagctttcaaatcttagattcagacgatcagcag
cgaatgatcaaacgcttacttaaagcaatgaatatcgatgataaaaagtggccagcgaaa
cagtttagctggtacatcagtgctaaaaaagacgaaggtctgcgccctaaagatattcag
gcttacgatatcaatgagcaaatgatgctgaaagtttatgcagcatatcaagaagcatgt
gatcgtgctggtttggtcgactttgcagaaattttattacgctgctacgaagtacttaac
aatcaccctacgctactgcgtcattatcagcagcgttttgctcatatgttggtagacgag
ttccaagataccaatacgattcaatatgcttggttaaagctgctagcaggaaacaccaac
agcattatgatagtaggtgatgatgaccaaagtatctatggttggcgcggtgcacgtatt
gagaatattaaacgctttttaaccgacttcgaagccgaaaccattcgtcttgaacagaac
taccgctcaacagccacaatattaaaagcctccaatgcgctaattaaaaataatgctgaa
cgcatgggtaaaagcctctggaccgatggtaacgagggtgaaccaatttcggtgtatgcc
gcttttaacgaattagatgaagcccgtttcgtaagcagtaaactgcgtagctggctaaat
gctggtaatgccttgcaagatgccgcgattctataccgtaacaatgcgcaatctcgtgta
ctcgaggaagccatgttacaagaagggcttaaataccgcatttatggcggcatgcgcttc
ttcgagcgtcaagagattaaagacgccctttcgtacctgcgcttagtgggtaatcgccaa
gatgatgccgcctttgagcgcgttattaacacccctgctcgtggcattggagataaaacc
ctcagccacattcgtgactgtgcgcggaacgagtctcttcctctgtggtatgctgcaaaa
gccattattgaacagcagcatctatcagggcgtgcagccagtgcagtaacaaaattttta
gagctggttgagcacattgaagacaaaatcagtgatcttaccttagaagagcaagctaaa
tacgcgattcaaacttcaggattgatggccatgtaccaagctgaaaaaggtgaaaaaggc
cgcgctcgcgtagaaaacttagaagagctcattagtgcctgtggccaatatgagctacct
gaagacgaagaattcagctcaccactgcaaggctttcttgcgtacacttctctcgaatca
ggcgaaggtcaagccgatgagcacgaagatgccgtgcaaatgatgacacttcattcagca
aaaggccttgagttcccgcttgtttttatggtgggtgttgaagaaggcatgtttccttca
cagcaaagtaatgaggagtctggtcgcttagaagaagagcgccgtttgtgttatgtaggc
atgacccgagcgatggaaaagctgtacattagtcacgctgaaactcgccgtttatatggc
caagaaaaataccacagcccctctcgattcttgcgcgaaatgccagaagactgtgttgag
gaaattcgtatcaaaacacaagtttcaaggcccccagccgcaggccgttttagctcatca
gtcacacatgccgcatttgaagacagtggctttaatttagggcaacgcgttttacatgca
aaatttggtgtaggaacggtactaaattatgagggcagtggtgcacagtcacgtattcaa
gtgaactttgatgatttaggcagtaagtggcttgttactcagtatgcaagacttcaagcc
ttataa
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