Pseudoalteromonas sp. MT33b: H3302_02485
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Entry
H3302_02485 CDS
T10969
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3302_02485 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmb03019
]
H3302_02485 (rnr)
03016 Transfer RNA biogenesis [BR:
psmb03016
]
H3302_02485 (rnr)
Enzymes [BR:
psmb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H3302_02485 (rnr)
Messenger RNA biogenesis [BR:
psmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3302_02485 (rnr)
Transfer RNA biogenesis [BR:
psmb03016
]
Prokaryotic type
tRNA degradation factors
H3302_02485 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rrp44_S1
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
QMW14995
LinkDB
All DBs
Position
1:510183..512648
Genome browser
AA seq
821 aa
AA seq
DB search
MTKQDPNLSREQEKYENPVPSREFILTHLESRAKPANFTQLCDELHVDDTERQIAFKRRL
RAMERDGQLYFNKFKCYALIDESGLVKGKVVGHRDGFGFLEVEGENKDWFIAKHQMNMVL
HGDIVLAKGNRKGGSGKCDARIIKVLTNERAPIVGRYFVEHGIAVVVAEDPRITQDIMIL
PGSENGARHNQMVQVQITQNPSRHMNAVGKVTEVLGEHLAPGMEIEVALRNHDIPHVWPE
AVEKQVAHLGEFVDEQAKQGRVDLRDLPLVTIDGEDARDFDDAVYCERKPSGGWRLWVAI
ADVSHYVGMNTPLNKEAIERGNSVYFPEQVIPMLPKVLSNGLCSLNPNVDRLCMVAEMTV
SEQGTLENYKFYEAVMNSHARFTYTKVHAILQGDERLCEEYAPMVPHLTDLHQMYMALKA
ARQERGAIEFETLETRFVFDAHRKIESIVPVVRNDAHKLIEECMILANVSAARLLEKHEA
SALYRVHDEPDAEKLGFFRNFLSELGIESTLSDEPTPKEITHVLAKLGDRPEAELIQTML
LRSMKQAVYQPDNIGHFGLALPAYAHFTSPIRRYPDLVVHRAIKAVLKAQGQQTSGEYAY
SNDEVDILGEQCSTTERRADDATREVADWLKCEFMQDHVGDEFGGVISSVTNFGLFVRID
DLQIDGMIHVTNLGNEYFHYDNAKHCLIGEQTHTVHRLGDKVTVQVSSVSLDERRINLVF
AGDVPQDRYARRRAQSAPAKPSIRAQLKAGKIPGKKGDDSRSDPKSSEKDNAKRGKSSHA
KGRKKPNSKQADVVKAGKKKSKKKATKKAKRPGKNARKRTS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacaggatcccaatctcagtcgagaacaagaaaagtacgaaaacccagtccct
agccgtgagtttatacttactcacttagaatctcgcgctaaaccagcaaacttcacacaa
ctttgtgacgaattacacgtggatgacactgaacgccaaattgcgtttaaacgtcgtttg
cgcgctatggagcgtgacggtcagttgtatttcaataaatttaaatgctacgcgttgatt
gatgaatcaggccttgtgaaaggcaaagtagttggccatcgtgatgggttcggcttttta
gaagttgaaggcgaaaataaagattggtttatcgcaaaacaccagatgaacatggtgctg
catggcgacattgtgcttgctaaaggcaatcgcaaaggcggcagtggtaaatgcgacgcg
cgtatcattaaagtgttaacgaatgagcgcgccccgattgttggtcgttattttgttgag
catggcattgcggtggttgttgccgaagacccgcgaatcacgcaagatattatgatactg
cctggcagtgagaatggcgcgcgccataatcaaatggtgcaagttcagatcacgcaaaac
ccaagtcgtcacatgaatgcagtgggtaaagtaacggaagtattgggtgagcatttagcc
cccggtatggaaattgaagtagcacttcgaaaccatgatattccgcacgtatggcctgaa
gccgttgaaaagcaagttgcccatttaggtgaatttgttgatgagcaagcaaagcaaggc
cgagtcgatttacgtgatttaccattagtaacaattgatggtgaagatgcacgagacttt
gatgacgccgtttactgtgagcgaaaaccatcaggtggttggcgtttatgggtcgcgatt
gctgatgtatcacattatgttggtatgaacacgccactgaataaagaagcgatagaacgc
ggtaattcagtgtactttcctgagcaagtgattcccatgttgccgaaggtgttgtcaaat
ggtttgtgttcattaaaccccaatgttgatcgcttatgtatggttgccgagatgaccgta
tctgagcagggcaccttagagaattataagttttacgaagcggtgatgaattcacatgcc
cgttttacttacactaaagtgcatgcaattttgcaaggtgatgaaaggctgtgcgaagaa
tacgcgccaatggtgccgcatttaactgatttacatcaaatgtacatggcactgaaagca
gctcgccaagagcgtggtgcaattgagtttgaaacgctagaaacgcgttttgtgtttgat
gctcaccgaaaaattgaatcaatcgtccctgtggtgcgtaatgatgcgcataagctcatt
gaagaatgcatgattttggcgaatgtatcggcagctcgtttattagaaaaacatgaggcc
agtgcactttatcgtgtgcatgatgaacctgatgctgaaaagcttggttttttcagaaac
tttttatctgaactgggcattgagtcaacattgtcagatgagccgacaccaaaagaaata
acacatgtacttgcaaaactaggtgaccgtccagaagccgagttaattcaaaccatgtta
ttacgttcaatgaaacaggctgtgtatcaaccagacaacattgggcactttggtttggcg
ttgcctgcttacgcgcattttacatcgccaattcgccgttaccctgatttagttgtgcac
cgtgcgattaaagctgttttaaaagcacaaggccaacaaacgtcgggcgagtatgcttac
agtaatgatgaagttgatattttaggcgagcaatgttcaaccactgaacgtcgcgcagat
gatgcgacccgtgaagtcgccgattggcttaaatgtgagtttatgcaagaccatgttggc
gatgaatttggcggggttatttcatcggtcactaactttggtttatttgttcgcatagac
gacttacaaatagatggcatgatccacgtaacgaatcttggcaatgaatacttccattat
gacaatgcaaaacactgtcttattggtgagcaaactcatacggttcatcgcttaggcgat
aaagtgacggttcaggtatcgtctgtcagcttagatgagcgtcgaattaatttagtgttt
gctggtgatgtgccgcaagaccgctatgcgcgacgccgtgcgcaaagtgcacctgcaaaa
ccgagtattcgtgcgcagttaaaagcagggaaaatccctggcaaaaaaggggatgatagt
cgctcagaccctaaatcttcagagaaagataatgcaaagcgtggcaagtcttctcatgca
aaagggcgtaaaaaacctaacagcaaacaagcggatgttgtaaaagcaggtaagaagaag
agcaagaaaaaagccaccaaaaaggcaaaaagaccgggcaagaacgcccgaaaacgtact
agctga
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