Pseudoalteromonas sp. MT33b: H3302_02710
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Entry
H3302_02710 CDS
T10969
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H3302_02710 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmb03021
]
H3302_02710 (rpoD)
Transcription machinery [BR:
psmb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H3302_02710 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Lmo0850
TMEM120A-B
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
QMW15037
LinkDB
All DBs
Position
1:complement(564294..566147)
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AA seq
617 aa
AA seq
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MDPTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIKVSENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKFEAEEMRLSDIISGFFDPNNEDESQISATH
IGSDLNEEQLDDEDDDDDDDDDDDSDDDADGDTGPDPEEARVHFEHLRELYNKARDTFEA
KGRSHPDSQAAIFEIGELFKTFKLVPKQFDRMVNNMREMMDRVRVQERLIMKQAVQIAKL
PKKNFVKHFANNETDTAWIDLEIAANEKYSVALEEVKPEIIRCISKLSAIEESTGLSIER
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPIDSATM
ESLRGATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSDLLKSFLDAK
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggatccaactcctcagtcacaattaaagcttctgattcaaaaaggtaaagagcaaggt
tatttaacttttgcagaagttaatgatcaccttccacaagacattatcgactcagatcag
gtagaagatatcattagcatgattaatgatatgggtatcaaggtaagtgaaaatgcgcct
gatgccgatgaattaatgatgcaagaaacaacgacagacgaagacgcagcagaagccgcg
gccgctgcacttgcgactgtagaaaaagagatcggtcgaacgactgaccctgtgcgtatg
tacatgcgcgaaatgggtactgttgagctacttacacgtgaaggcgaaattgttatcgcc
aagcgtattgaagaaggtatcaaccaagttcagatttctgttgctgaataccctgaagca
attacatatctactcgagcaatgggacaagtttgaagcagaagaaatgcgcttaagcgac
attatttctggtttctttgatcctaataatgaagacgaatcacaaatttctgcgactcac
atcggttcagatctaaatgaagagcagctcgacgacgaagacgacgatgacgacgacgac
gacgatgatgacagcgatgatgatgcagatggtgacacaggtccagatcctgaagaagca
cgtgtccacttcgaacatttgcgtgagctttacaataaagcacgcgatacattcgaagca
aaaggccgctcacaccctgattcacaagctgctatttttgaaatcggtgaactgtttaaa
acatttaaactagttcctaaacagtttgatcgcatggtaaacaacatgcgtgaaatgatg
gatcgcgttcgtgtacaagaacgtcttatcatgaagcaagctgtacaaattgcgaagcta
ccaaagaaaaactttgtgaagcacttcgctaacaacgaaacagacactgcttggattgat
cttgaaattgctgcaaacgagaagtactcagtagcacttgaagaagtaaaaccagaaata
attcgttgtattagcaagttatctgcaattgaagaaagcactggcttaagcattgagcgt
attaaagatatcaaccgtcgaatgagcattggtgaagctaaagcgcgccgtgcaaagaaa
gaaatggttgaagccaacttacgtcttgtaatttcaattgcgaaaaaatacaccaaccgt
ggtttacaattcttagaccttatccaagagggtaacattggtctaatgaaagcggttgat
aagttcgaatatcgccgtggttataagttctctacttatgcaacatggtggatccgtcaa
gcaattacgcgttcaattgctgaccaagcgcgtaccatccgtattcctgtgcacatgatt
gagacgatcaacaagttaaatcgtatctctcgtcaaatgttacaagagatgggccgtgag
ccgagcccagaagagttagctgagcgtatgttaatgcctgaagataaaattcgtaaggta
cttaaaatcgctaaagagccaatttcgatggaaactcctatcggtgatgatgaagattcg
cacttaggtgacttcattgaagatacaaccattgattcgccaattgattctgcaacaatg
gaatctcttcgaggcgcaaccaatgacgtattagcaggtctaacagcacgtgaagctaaa
gtactgcgtatgcgtttcggtatcgacatgaacaccgaccatactttagaagaagtaggt
aaacaatttgacgtaacacgtgaacgtattcgtcaaattgaagcgaaagcgttacgtaaa
ttacgtcacccttctcgctcagacctactaaaaagcttcttagatgctaaataa
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