Pseudoalteromonas sp. MT33b: H3302_03585
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Entry
H3302_03585 CDS
T10969
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3302_03585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmb03019
]
H3302_03585
Enzymes [BR:
psmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3302_03585
Messenger RNA biogenesis [BR:
psmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3302_03585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
NACHT
Motif
Other DBs
NCBI-ProteinID:
QMW15205
LinkDB
All DBs
Position
1:766069..767304
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AA seq
411 aa
AA seq
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MSVTSFSELNLAPELLSALQAENYHTPTAIQSQTIPLILAGVDVMGSAQTGTGKTAAFVL
PLLNNLLREEPLPEAVKVLILTPTRELAQQVFASVERYAANTPIKAALAYGGASIGPQIK
AIKGAQVVVATPGRLLDHVIKGSIKLSAISALVFDEADRMLDMGFIDEIKRILRHVPKQR
QTLLFSATFDDSIFELSKQLLNDPKLVEVDKRNSAAVEVEQIVYAVDEDRKRELVSHMIG
MKNWQQVLIFTRTKQTADSLAKEMCKDGLKTESIHGDKSQGARDKALQNFKTGVTRVLVA
TDVAARGLDIASLKYVINYELPYVAEDYVHRIGRTGRAGETGLAMSLVSIDEQWLLDEID
VLLDTRLTPQWLPGYEPDLTKEPKQVRKNTNKARRSRDKKRILGQKNPRRR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtaaccagcttttcagagttaaaccttgcgcctgaactcctttcagcattgcaa
gcagagaattatcacaccccaacggctattcaaagccaaactatcccgcttattttagcc
ggggttgatgttatgggaagtgcacaaacaggcacgggtaaaacagctgcctttgtttta
ccattgcttaataacttattgcgtgaagagccgctgcccgaggctgtaaaagttttaatc
ctgacaccaacgcgagagcttgcacagcaagtatttgccagtgttgagcgttatgcagct
aatacacctattaaagctgcgcttgcttatggcggcgccagtattggcccacaaattaaa
gccattaaaggtgcgcaagttgtggtggctacaccgggacgattacttgatcatgtgatc
aaagggagcattaaattatctgccattagtgcccttgtttttgatgaagcagatcgtatg
cttgatatggggttcattgatgaaataaagcgtattcttcgtcatgttccaaaacagcgc
caaaccttactcttttcagccacatttgatgacagcatttttgagctaagtaaacagttg
ttgaatgatcctaagttagttgaggttgataaacgcaattcggctgctgttgaagttgag
cagattgtgtatgcggttgatgaggatcgtaaacgcgaactcgtttcacatatgatcggc
atgaaaaattggcaacaagtacttatattcacccgcactaaacaaacggccgatagtctg
gcaaaagaaatgtgtaaggacggcttaaaaacggagtctattcacggcgataaaagccag
ggggcgcgagacaaagcgctgcaaaattttaagacgggtgtcactcgagtacttgtcgct
acagatgttgcggcgcgtggccttgatatcgcctcattaaagtatgtgattaactacgaa
ctaccctatgttgcagaggactatgttcaccgtatagggcggacaggacgagcgggtgaa
acagggttggccatgtcattggtgagtattgatgagcaatggttactggatgaaattgat
gttttattagatacacgcttaacaccacaatggctgccagggtacgagcctgatttaaca
aaagagccaaaacaagtccgaaaaaacacgaataaggcacgacgctctcgtgacaaaaaa
cgtatattagggcaaaaaaatcctaggcgccgatag
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