Pseudoalteromonas sp. MT33b: H3302_04915
Help
Entry
H3302_04915 CDS
T10969
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3302_04915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmb03019
]
H3302_04915
03009 Ribosome biogenesis [BR:
psmb03009
]
H3302_04915
Enzymes [BR:
psmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3302_04915
Messenger RNA biogenesis [BR:
psmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3302_04915
Ribosome biogenesis [BR:
psmb03009
]
Prokaryotic type
rRNA helicases
H3302_04915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrD-helicase
CMS1
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QMW15446
LinkDB
All DBs
Position
1:complement(1060288..1062117)
Genome browser
AA seq
609 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFESLQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNEPEQVHISARNSTVSTVEQVFWNAHVHKNKAIVRFLEA
EEYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGLLDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRSGKAILFVKHNERYLLKNIIR
HTKSEIAQVDLPTAKVVEEKRIKALQDKLTIALENKDITFFNQVAANMAEKLELSFEDLA
GALLCLAQQQSPIKVEEVKVQPRGERTERGGDRRRNERADRGDRPARERKPREPRERNSR
SMGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKDV
LDHFQKVFICKRPMGMTLTKAETASERPERSERPAGERSDKKRSFKDKDRGEKRSGPRKE
RRPVSFTAN
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctttaaatctttctcctgcaattttaaaagcagtt
gaagagctaggttacaagactccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcgcaaacgggtacaggtaaaacagcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgttctaacg
cctacgcgtgaacttgcgatccaagtagctgaggcattcgaacaatatgctaagcatact
cgtggtgtagaagttttagccctttatggtggccaaagctacagcatccaattaagtgca
cttcgtcgtggcgcgcaaatcattgttgcaacgccaggccgcttaatcgaccacattaac
cgtggcacaatcaaattcgagagcttacaagcccttgttcttgatgaagcggacgaaatg
ttacgcatgggtttcattgatgatgtagaaagcatcatggaaaaaacaccgcgtgaaaag
caaacatgtcttttctctgcaaccatgcctaagcaaatccaaaatatcagcagcaaatac
atgaacgagcctgagcaagttcatatttcagcgcgtaactcaacagtatcgactgttgag
caagtattttggaatgcacacgtacacaaaaacaaagcgatcgtgcgcttcttagaagct
gaagaatacgatggtgcgattgttttcgtacgtacacgtaatgacacagtacaattagct
gaattacttgagcgcgaaggtttctctgccgcaccacttaatggtgacatgaaccaacaa
gcacgtgaacgcactgtagagcgtttgaaaagtggtttacttgatatcgtaattgcaacc
gacgttgcagcacgtggtctagatgttgaccgtttaagcttggtaattaactacgatatt
ccacaagactctgaagcctacgttcaccgtattggccgtacaggtcgtgcgggtcgttca
ggtaaagcgattcttttcgtaaaacacaacgagcgttatttacttaaaaatatcattcgt
catacgaagtctgaaattgcacaagtagatttaccaacagcgaaagttgttgaagaaaaa
cgcatcaaagcattgcaagacaagttgactattgcacttgaaaataaagacatcacgttc
tttaaccaagtagcggccaacatggctgaaaagcttgaactaagcttcgaagacttagca
ggtgccttactgtgtttagcgcagcaacaatcaccaatcaaggttgaagaagttaaagtt
caaccgcgtggcgaacgtacagaacgcggtggtgatcgccgtcgtaacgaacgtgctgac
cgtggtgatcgccctgctcgcgaacgtaaaccacgtgagccgcgtgaacgtaacagccgc
agcatgggccctatggatacataccgtatcgaagtaggtcgtgagcacggtgtacaagtt
aaaaatatcgttggtgcgattgctaacgaagcagatatctcaagcaagtttattggtgac
attcgtctgcacgacagtcacagtacggtacaattaccgcaaaacatgcctaaagatgtg
cttgatcacttccaaaaagtgtttatttgtaaacgcccaatgggaatgacactcaccaaa
gctgaaaccgcttctgagcgcccagagcgcagcgaacgcccagcaggtgagcgcagtgat
aaaaagcgtagcttcaaagacaaagaccgtggtgaaaaacgtagcggccctcgtaaagag
cgtcgtccagtaagcttcacagcaaactaa
DBGET
integrated database retrieval system
