Pseudoalteromonas sp. MT33b: H3302_06230
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Entry
H3302_06230 CDS
T10969
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3302_06230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmb03019
]
H3302_06230
Enzymes [BR:
psmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3302_06230
Messenger RNA biogenesis [BR:
psmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3302_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_25
CMS1
Motif
Other DBs
NCBI-ProteinID:
QMW15668
LinkDB
All DBs
Position
1:1347445..1348851
Genome browser
AA seq
468 aa
AA seq
DB search
MSFDGLGLSQSLVNAVLEKGYETPTPIQTQAIPAIIAGRDVMAAAQTGTGKTAGFTLPLI
ERLAKGKKASGNRVRALVLAPTRELALQVSENVEEYAKHSNISSFVVYGGVKINPQMMRL
RKGVDILVATPGRLLDLHNQNALQFDTLEVLVLDEADRMLDMGFIHDIKRIIAKLPTQRQ
NLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKTVSQSVYAVDKSRKTALLSHLIRT
NNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKNGEVRVLVAT
DIVARGLDIVELPHVINYDLPNVYEDYVHRIGRTGRAGASGHAISFVTAEDAIDLYGIER
FIGELIPRATEAGFEPSNPVPERELDARPIKPKKPKKAKQPFSKPKSDSKKPNSNGSGIG
PRRGGSGKKSNATKGSDEQTQSPWAKRQSVGGNAQRKRRPKNGGSNNS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgatggcttaggattatcacagtctttagttaatgcagttttagaaaaaggc
tatgaaacacctacgcctattcaaacacaagcgatccctgcgattatagcgggtagagac
gtgatggccgcggcgcaaaccggtacaggcaaaacagcaggttttactttaccgttaatc
gagcgtttagccaaaggcaaaaaggcaagtggaaatcgcgtgcgcgcgcttgtgcttgca
cctacacgtgagcttgcattacaagtgagcgaaaacgtagaggaatatgctaagcattct
aatattagttcgtttgtggtgtatggtggcgttaaaattaacccgcaaatgatgcgcctt
cgtaaaggtgttgatattttagttgcaacaccgggacgcttactggatttacataatcag
aatgcgctccagtttgataccttagaagtgttagtgcttgatgaagccgaccgtatgctt
gatatgggctttattcacgatattaaacgtatcattgcgaagttacctactcagcgtcaa
aatttgatgttttcagcgacgttctctgatgaaatacgtgccttagcaaagggacttatt
aacgacccagtcgagatttctgtagcagctaaaaacaccaccgcaaaaaccgtgtcacaa
tcggtttacgcggttgataagtcaagaaaaacagccctattgagccatttgattcgtacc
aacaattggcaacaggtattagtttttagccgtaccaaacacggtgctaaccgtttggtt
aaacagttagagcgtgatgacattgtgggcgcggctattcatggtaataaatcgcaaggt
gcgcgtgttaaagcgcttgaaggttttaaaaatggcgaagtacgtgtattagttgccaca
gatatcgtagcccgagggcttgatattgttgagctgccacacgttatcaattacgacttg
ccgaatgtgtacgaagattatgtacaccgtattggtcgaactggtcgtgcaggtgcttct
gggcatgctatttcgtttgtgacagccgaggatgccattgatctatacggtattgaacgt
tttattggtgaattgatcccgcgcgcgactgaagcggggtttgaaccaagcaatcccgtg
cctgaaagagagcttgatgcacgcccaattaaacctaaaaagccgaaaaaagccaaacag
ccgttttctaagccgaagtcggatagtaaaaaaccaaatagcaatggcagtggcataggt
ccacgccgtggtggttcgggaaaaaaatctaatgccactaaaggaagtgacgagcaaaca
caaagcccatgggctaagcgtcagtctgtaggggggaatgctcaacgcaaacgtcgccct
aaaaacggtggctcaaataacagctaa
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