Pseudoalteromonas sp. MT33b: H3302_09960
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Entry
H3302_09960 CDS
T10969
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
psmb Pseudoalteromonas sp. MT33b
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psmb01011
]
H3302_09960
Enzymes [BR:
psmb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
H3302_09960
Peptidoglycan biosynthesis and degradation proteins [BR:
psmb01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
H3302_09960
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM3_NFP
NMB0315_dom_I
LysM_RLK
LysM_OapA
LysM2_CERK1_LYK3_4_5
DUF6884
DUF3071
SLAM
Motif
Other DBs
NCBI-ProteinID:
QMW13415
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Position
1:2179191..2180774
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AA seq
527 aa
AA seq
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MYKSPLVLTLALVLSGCQLTATDTAGSDNDNRVEQQLAGASPSDINDALMLNAQYQQLAD
TDEPPPVFDDVWERIRYQLSIDVPQNRPVVAERNYYARHQAYLDRIAKRAEPYLYFIVEE
VEKREMPIEIALLPIVESAFDPFGYSHRSASGIWQFMPQTGERFDLKQNWWYDGRRDIVQ
STRAALDYLSYLHKTLEGDWLNAIAAYNSGEGRLLRAIKKNRKKHLPTDFWSLDLPKETT
SYVPKLLALSDLVKRSDEFGIKWQPIINAQVIDVVNVGSQIDLALAADMAGISLTELYRL
NPGFNRWATDPNGPHFLLLPSDKIDTFSEKLAKTEQKDRLRWQQYVVARGDSLSVIAKKF
STSAGAIKTLNKLSSNTIRVGQQLLVPLSDGEINSQHLPDSVRMAANKATRKKLSHKVAS
GDTLWDISREYDVTIAELAKWNNLKKNAVLRVGQTLTVYKDEKTQLAATQTTERTITYKV
RRGDSLARIAAKFNVSVDDIIKWNSLAGQKYIQPGQKLKLRVDVRSA
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtataagtctcctttagttttaacgcttgcgctggttttgagtggctgtcaattaaca
gcaactgacactgctgggtcagataatgacaaccgtgttgagcaacagcttgcaggcgca
agccccagtgacatcaatgatgcattgatgctcaacgcacagtatcagcaattagctgat
actgatgagccccccccagtatttgatgatgtatgggagcgtattcgctaccagctgtct
attgatgtaccgcaaaatcgccctgttgtcgccgagcgtaactactatgcacgccatcaa
gcatacctagatcgtatcgccaaacgtgccgagccttatctttactttattgttgaagaa
gtcgaaaaacgtgaaatgcctatcgaaattgcactgctgccaattgttgagagtgcattt
gatccctttggttattcacatcgcagtgcatcaggcatatggcaatttatgccacaaaca
ggcgagcgtttcgatttaaaacaaaactggtggtatgacggtcgtcgcgacatcgtgcaa
tcaacgcgggctgctttagattacttatcctatttgcacaagaccttagaaggtgactgg
ttaaatgcaattgcagcctataattcaggtgaaggtcgtttactaagagcgattaaaaag
aaccgtaagaagcatttaccgaccgatttctggtcgttagatttacccaaagaaaccacc
tcttacgtaccaaagctgctcgcactttctgatcttgttaaacgtagcgatgaatttggc
attaagtggcaaccgattattaatgcacaagttatcgatgtcgttaacgtaggaagtcaa
attgatttagccctcgctgcagatatggcaggtattagcttaacggagttataccgtttg
aaccccggttttaaccgctgggcaaccgatccgaatgggccgcatttcttattattacca
tcagataaaatagacaccttctctgagaaattggcaaaaacagagcaaaaagatcgttta
cgctggcaacagtatgttgtggcgcgcggcgatagcttatcggttattgcgaaaaagttt
tcaaccagtgcgggagcgattaaaacactcaataaattgtcatcaaacacaatacgtgtt
gggcaacaattattagtgcctttaagtgatggcgaaattaacagccaacacctgccagac
tctgttcgcatggctgcaaataaagcaacgcgaaaaaaactgagccataaagtagccagt
ggtgacacgttgtgggacataagccgcgaatacgatgtcacaattgctgaacttgctaag
tggaataatcttaagaaaaatgcagtgttacgtgttggtcaaacactaacggtgtataaa
gatgaaaaaacacagcttgcagcgactcaaacgaccgagcgcaccattacctataaagtt
cgccgtggcgattcattagcacgtatcgctgctaagtttaatgtctctgtggatgatatt
ataaagtggaactcgttggctgggcaaaaatacattcaaccaggccaaaagttaaaatta
agggtcgatgttcgcagcgcctaa
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