Pseudoalteromonas sp. MT33b: H3302_12995
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Entry
H3302_12995 CDS
T10969
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
psmb Pseudoalteromonas sp. MT33b
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmb03021
]
H3302_12995 (rapA)
Transcription machinery [BR:
psmb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
H3302_12995 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
QMW13971
LinkDB
All DBs
Position
1:2870920..2873814
Genome browser
AA seq
964 aa
AA seq
DB search
MNFSLGQRWISDTESDLGLGTVVALEGRQVSILFPASGENRVYSLTEAPVTRVAFNPGDV
IRSVEEWELEVESVEEQGELLCYHGTRVDNGEKVQLKETFLDHFIKFNKPQDRLFAGQVD
RFDRYTLRYQTWQHQFERQQSPLKGLIGQRANLIPHQLYIAQEVGKRFAPRVLLSDEVGL
GKTIEAGMILHQQIISARASRVLIVVPENLQHQWLVEMLRRFNLRFSIFDEERCDEAFAD
SPNVFETEQLVLTSLEFLSKKKRWFEQATLADWDLLVVDEAHHLSITNGKPSTEYQRMAE
LSQDIPGLILLTATPDQLGHRSHFARLQLLDPDRFYDYDAFVEEESNYKDVAEAANQLLS
EQRLDDTARETLKALLKETDITEVLAKAEQGDETARNEILSMLLDRHGTGRILFRNSRSG
IDGYPSRKLHAYPMAMPKQYKTAMSVLGNIGGIQSAELSALRALFPEKIFQEFEGENASW
GAFDPRVDWLIETLKTLKHEKVLLICAKAETAISLEQILREREAIKASVFHEGMSIVERD
RAAAFFADEYDSAQILLCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQTQ
DVNIHVPYFENTAQEVLLRWYNEGLDAFETTSTTGQMLYKEFGEELLEFIGTHNCDEEEL
DPLLEQVASQNAKLRKQMESGRDRLLELHSSGQGRAESLVADIEELDDQFTLPSYMINVF
DTFGVSQEDKGENTIILKPTEHMLNPSFPCLKDDGITVTFDRATALSQEDAHFISWDHPM
VQGSLDMICDDDFGTASVALLKNKKLPAGTFFVELIFIAEAMAPKSLQVGRFLPPTPIRV
LLDKSSNNLADNVAFDAFNQQLSAVGRQTASKLASALQSAIHPMITSAQGLAQTKLDALR
VESLEKMHTALGEEQARLTALKQINPNIRDEELSFFDKQRSDLTTYIEKAQVKLDAIRLI
VVSH
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttccttaggtcagcgttggatcagtgatactgagtcagatttaggattaggc
accgtagttgcccttgaaggccgtcaggtcagcattttatttccagccagtggtgaaaac
agagtttattctttaacagaagcacctgttactcgtgtcgcatttaatccaggcgatgtt
attcgcagcgttgaagagtgggaacttgaagtagagtcagttgaagaacaaggtgagctt
ttatgctaccacggtacacgtgttgataacggtgaaaaagttcagttaaaagagaccttt
ttagatcactttattaaatttaataaaccgcaagaccgcttatttgcaggccaagtagac
cgttttgatcgttacacccttcgctatcaaacttggcagcaccagtttgagcgtcagcaa
tcacctttaaaaggcttaattggtcaacgtgccaacctaatacctcaccagctttatatt
gcacaagaagtgggtaaacgtttcgcgccgcgtgttttattgtcagatgaagtgggcctt
ggtaaaaccattgaagcggggatgattttacatcaacaaatcattagtgcccgagctagc
cgtgtattaattgtggtgcctgaaaacctgcaacaccaatggctcgttgagatgcttcgt
cgctttaatttacgtttctctatttttgatgaggaacgttgtgatgaagcattcgcagac
tcaccgaatgtattcgaaacagaacagttagtacttactagccttgaatttttaagcaag
aaaaaacgctggtttgaacaagcaacattagccgattgggatttactcgtggttgatgaa
gcgcaccatttgagtattacaaatggtaaaccaagcacagaatatcaacgcatggctgaa
cttagccaagatattccaggccttattttactaacagctacacccgatcaattaggccac
cgcagccactttgcgcgtttgcaattactcgaccctgatcgtttttatgattacgatgct
tttgttgaagaagaaagtaactacaaagatgtcgcagaagctgctaatcaactactcagt
gagcaacgcttagatgacacggctcgcgagacattaaaagccttattaaaagaaaccgat
atcactgaggtgcttgctaaagctgagcaaggtgatgaaaccgcgcgcaacgaaatttta
tcaatgctactggaccgccatggtaccggccgtattttgttcagaaatagccgcagcggt
attgatggttaccctagccgtaaactccacgcttacccaatggcgatgccaaagcaatat
aaaaccgcaatgtcggtattagggaatataggcggcattcaaagtgctgaactaagcgcc
ctgcgcgcgttattcccagaaaaaatatttcaagaatttgaaggtgaaaacgccagttgg
ggcgccttcgacccacgtgttgactggttaattgaaacattaaaaacactaaaacacgaa
aaagtcctgctaatttgtgctaaagctgaaacagcgattagccttgaacaaattttacga
gagcgcgaagccattaaagcatctgtgttccatgaaggtatgtcgattgttgagcgtgac
cgtgctgcggcattttttgctgatgaatacgacagcgcacaaatccttctgtgttcagag
attggttcagaaggccgtaacttccagttctcacatcatttagtgctctttgatttacct
ttgaaccctgatttgttagagcaacgtattggtcgccttgaccgtattggtcaaacgcaa
gatgtaaacattcatgtgccttactttgaaaatacagcacaagaagtcttgctacgctgg
tataacgaaggcctagatgcgtttgaaacaacatcaaccacagggcaaatgttgtataaa
gaattcggtgaagagctgcttgaattcattggtacacataattgtgatgaagaagagcta
gacccactactcgaacaagttgctagccaaaatgcaaaactgcgcaaacaaatggaaagt
ggtcgtgaccgtttattagagctgcactcaagtggtcaaggccgtgctgaaagcttagtc
gctgatatcgaagagctagatgaccagtttacattgccaagttacatgatcaatgtgttc
gacacttttggtgtaagccaagaagataaaggtgaaaataccattatcttaaaaccaacc
gagcatatgttgaatccctctttcccttgcttaaaagatgacggtattaccgtgaccttt
gaccgtgcaactgcactatcgcaagaagatgcgcattttatcagctgggatcacccgatg
gtgcaaggcagtttagacatgatttgcgatgatgactttggtacagcatcggttgccctg
ctgaaaaacaaaaaactccctgcgggtacattttttgttgagcttatcttcattgcagaa
gccatggcaccgaagtcattacaggtaggtcgtttcttaccgccgactcctattcgtgtt
ttacttgataaaagcagcaataacttagccgataatgttgcctttgatgcctttaaccaa
cagctttctgcggttggtcgtcaaacggcaagcaagttagccagtgcgctacaaagtgcc
attcacccaatgatcaccagcgctcaggggttagcccaaacaaaactcgacgcattgcgt
gttgagtcattagaaaaaatgcataccgcattaggtgaagagcaagcccgtttaaccgcg
cttaaacaaattaatccgaatattcgtgatgaagagcttagcttctttgataaacaacgc
agtgacctgacgacctatattgaaaaagcccaagttaaattagatgcgattcgtttgatt
gttgtgtcgcactag
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