Pseudoalteromonas sp. MT33b: H3302_17365
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Entry
H3302_17365 CDS
T10969
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psmb Pseudoalteromonas sp. MT33b
Pathway
psmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3302_17365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmb03019
]
H3302_17365
03400 DNA repair and recombination proteins [BR:
psmb03400
]
H3302_17365
Enzymes [BR:
psmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3302_17365
Messenger RNA biogenesis [BR:
psmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3302_17365
DNA repair and recombination proteins [BR:
psmb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H3302_17365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
AAA_22
SHCBP_N
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QMW16753
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All DBs
Position
2:297679..299613
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AA seq
644 aa
AA seq
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MTTALHTSLNQYFGFTEFRQGQQQTIEQLLNQQSSLAIFPTGSGKSLCYQLTALHLPNLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQTSEQSHTVMSDVRTGKVKILMVSVERFKN
ERFREFIKQVPISMLVVDEAHCISEWGHNFRPDYLKLPRYRDELNIPLVLLLTATATKKV
KRDMCERFAIAPECVVQTGFYRANLDLSVLSVASQDKQSHLTRVIAEQQGAGIVYVTLQH
TAEQVAAALAQTGLNAVAYHAGLDDDKRWQIQDDFMAGNINIVVATIAFGMGIDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDSKQSNCYTLANLDGLNTVENFVYADTPEQSGIEYVIN
NIRTEQTNGQWEMQEYSLSSDSNIRALALKTLLVQLEIHGAITPLYAYYADFKYKFLTDK
GTLLQQFDEQRQAFLQQVFNHTEFKKIWGTLNFDALTHATQVDRKRVVAALDYLAEKGHI
ALETKRITQVYEVNNEVINADNLASQLHQYFIEKEQAEIKRIAALVRFFELNSCLSYNLA
RYFDDHNAPKECGHCSVCRGQSVKLSYSLEHTMPDTAVIAAKVTQLKEHLATKGVTEISI
DTQCRFLAGMSVPLFTRNKVRQLSGFGVCEHQRYSDIKAVLQQL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgactacagcactccacacttcgctaaatcaatactttggctttactgaatttcgccag
ggtcagcaacaaacgattgaacaactgttaaatcaacaatcatcattggctatctttccg
acagggtcgggcaagtcgttgtgttatcaattaactgcattgcatttgcctaatttgacc
ttggtggtttcacccttgttagcgctgatgaaagatcaaatcagctttttgaatagcaaa
ggtatttacgcggccagcttagattcgagtcaaacgagcgaacaaagccataccgtgatg
agtgatgtgcgaaccgggaaggttaaaattttaatggtgtcggtggagcgttttaagaac
gaacgctttcgcgagttcatcaagcaagtgccgatttcaatgctggtggttgatgaggcg
cactgtatttctgaatgggggcataactttagacccgactatttaaaactgccgcgttat
cgcgatgagcttaatattcctctggtgttgctattaactgcaacggcaaccaaaaaagta
aaacgtgacatgtgtgagcggtttgccattgcacctgaatgcgttgtgcaaacagggttt
tatcgtgcgaaccttgatttatcggtgttaagtgtggcgagccaagacaaacaatcgcac
ttaacacgcgttattgctgagcagcagggcgcaggcatcgtgtatgtgacactgcaacac
actgctgagcaagtggccgcagcgttagcgcagacaggacttaatgcagtggcgtatcat
gcgggtcttgacgatgataagcgctggcaaattcaagatgactttatggcgggtaacatt
aatattgtggttgccaccattgcgtttggcatgggcattgataagtcggatattcgcttt
gttattcattatgatttacctaaatcaattgaaaactacagtcaagaaataggccgcgca
gggcgagattctaagcaatcaaattgttataccttagcaaatctagatggcctgaacaca
gttgaaaactttgtctatgccgacacccccgagcaaagtggtattgaatatgtgatcaac
aatattcgcacggagcaaacgaatggtcagtgggaaatgcaagaatacagtttgtcgagt
gacagtaatattcgtgcattagccttaaaaacgttattagtacagcttgaaattcatggc
gctatcacgccgttgtatgcctattatgctgactttaaatataagtttttaacagacaaa
ggcacacttcttcagcaatttgatgagcagcgccaagcatttctacagcaggtatttaat
catactgagtttaagaaaatttggggcactctcaactttgacgccttaacacatgccacg
caagtcgatagaaaacgggtggttgctgcgctcgattatttggccgaaaaaggtcacata
gcccttgaaactaaacgcattacacaagtgtatgaggtgaataacgaagtcattaatgca
gacaatttagcgtcgcaattacatcagtactttattgaaaaagagcaggcagaaataaaa
cgcattgccgcattggtgcgcttttttgagcttaatagctgtttgagttataaccttgca
cgttattttgatgatcacaatgccccaaaagagtgtggccattgttctgtgtgtcgaggc
cagtctgtaaaacttagttattcacttgagcacaccatgccagacactgcggttattgca
gctaaagttacacagctaaaagagcacttagccactaaaggggtaactgaaatcagtatt
gatactcaatgccgctttttagcggggatgagcgtgccactgtttacccgcaataaagtt
aggcagctttcaggttttggggtgtgtgaacaccagcgttatagcgatattaaagcagtg
ctacagcagttgtag
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