Pseudomonas sp. MM213: K5R88_00565
Help
Entry
K5R88_00565 CDS
T11312
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
psmd Pseudomonas sp. MM213
Pathway
psmd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psmd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K5R88_00565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmd03021
]
K5R88_00565
Transcription machinery [BR:
psmd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K5R88_00565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
GerE
HTH_11
Xre-like-HTH
HTH_Tnp_ISL3
HTH_29
PhyR_sigma-like
HTH_Tnp_4
HTH_7
HTH_24
HTH_28
HTH_40
DUF6362
RovC_DNA-bd
HTH_17
HTH_36
TnsD
DUF1804
HTH_69
HTH_31
Motif
Other DBs
NCBI-ProteinID:
UCP10175
LinkDB
All DBs
Position
119522..120031
Genome browser
AA seq
169 aa
AA seq
DB search
MSDAAMPKEQTLHDLYRDHRGWLEGWLRRRMGNGCDAADLSQDTFLRVLASSQRIADLQE
PRAYLLTVGKRLLSNFYQRRSLEQAYLAALASMPEDCAPSPEQRWLLLETLQALDELLDG
LPRAVRRAFLWSQLEGLNYQQIAERLRVSERTVKRYMAQAYEHCLLVEL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgcagcgatgccgaaggagcaaaccctccacgacctgtaccgcgatcaccgt
ggctggctggaaggctggttgagaaggcgcatgggcaacggctgtgatgcggcggatttg
agtcaggatacgttcttgcgtgtgctcgccagctctcagcgcatcgctgacttgcaagag
ccccgtgcctatctgctgaccgtcggcaaacgcctgttgagcaacttctatcagcgtcgc
agccttgagcaagcctatctggctgcgttggcgtcgatgcctgaagactgtgcgccatca
cccgaacagcgctggctgctgctggaaaccctgcaagcactggatgagctgctcgacgga
ctgccaagggcggtgcgccgagcgtttctctggagtcagcttgaaggcttgaactaccag
caaatcgccgagcgcctgcgggtgtcggagcgcacggtcaaacgttacatggcgcaagcc
tacgagcattgcctgttggtggaactgtga
DBGET
integrated database retrieval system
