Pseudomonas sp. MM213: K5R88_01675
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Entry
K5R88_01675 CDS
T11312
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
psmd Pseudomonas sp. MM213
Brite
KEGG Orthology (KO) [BR:
psmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psmd03016
]
K5R88_01675
Enzymes [BR:
psmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
K5R88_01675
Transfer RNA biogenesis [BR:
psmd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
K5R88_01675
Prokaryotic type
tRNA splicing ligases
K5R88_01675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UCP10382
LinkDB
All DBs
Position
336780..338006
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AA seq
408 aa
AA seq
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MKEHTYQLLEVANGKPIKLWTEGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLHGLRCAIEKAVPHGRTSTRS
RRDKGAWDDVPQQADKAWSALDPRFKAITDKYPKLANTNNRGHLGTLGSGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQLAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFAKQNRALMMQAVIQATRQVISKPFEVALEAVNCHHNYVQKERHFGEDILVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTKAKNMFTVEDQIRA
TAHVECRKDAAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacatacctaccaactgctggaagtcgccaacggcaaaccgatcaaactgtgg
accgagggcgtcccggtagaaaacgaagccagacagcagttgatgaacaccgcaaagatg
ccgttcatcttcaagcacctggcagtgatgccggatgtgcatttgggcaagggctcgact
ataggcagcgtgattcctaccgttggggcgatcattccggctgctgtcggggtggatatc
ggttgcggcatgattgccgcgcgcacgtcactgacggccagtgatttgccggacaacctg
catggcctgcgttgcgcgatcgagaaagcggtgccgcacgggcgcacatccacacgttca
cgtcgggacaagggcgcctgggacgatgtacctcaacaagccgataaggcctggtcggcg
ctggacccgcggttcaaggcgatcactgacaagtatccgaagctggccaacaccaacaac
cgtgggcatttgggcacgttgggtagcggcaaccatttcatcgaggtgtgcctggatgaa
gccaatcgggtctggttcatgctgcacagtggatcccgtggggtcggtaacgctattggc
aacctgttcattcagttggcgcaggcggatatgcgtcagcacatcgccaatctgcctgat
cgcgacctggcctacttcgaggaaggcagccaacacttcgatgattacgtcgaggcggtc
ggttgggcccaggatttcgccaaacagaaccgcgcactgatgatgcaagcggtgattcaa
gcgacgcggcaggtgatcagcaagccttttgaggttgcactggaagcggtgaactgccac
cacaactatgtgcaaaaagaacggcattttggtgaggatattttggtcacccgaaaaggc
gcagtgtcggcgaagaagggcgaactggggattattccgggatcgatgggggcaaaaagc
ttcatcgtccgcgggctcggtaacgaggaatcattctgctcttgcagccacggtgccggc
cgcaccatgagtcgcaccaaagcgaaaaacatgttcaccgtcgaagatcagatccgcgcc
accgcccacgtggagtgccgcaaggatgctgctgtcatcgatgaaataccgatggcctac
aaggacatcgaccaagtcatgcacgcccagcgtgagctggtggaagtgctgcacaccctg
cgtcaggtagtgtgcgtaaaaggatag
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