Pseudomonas sp. MM213: K5R88_13120
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Entry
K5R88_13120 CDS
T11312
Symbol
rne
Name
(GenBank) ribonuclease E
Organism
psmd Pseudomonas sp. MM213
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UCP12502
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Position
2914708..2917932
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AA seq
1074 aa
AA seq
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MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEASINQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVVAAPVAAPAAAPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATTERPARNEERRNG
RQQSRNRNGRRDEERKPREERAPREERAPREPREAREETPAVAREERAPREERAPRAPRE
ERAPRAPREDRKPRGEREERVRELREPLDAAAPAAAAATATAAAEERPARQPREERAPRP
PREERQPRAEQAAAAVAEEELTGNEEQLQEDGQEGAEGDRPRRRSRGQRRRSNRRERQRD
ANGNVIEGSEESESAEGNEGAEAPSAADLAAGLAVTAAVASTVISAPAEAQANEQAERAT
AATLETAPVEAPVVEATTPVEVTAAPEVEVAPVCEAQPEVEAAAEPAVVAETPAVVAEPV
VETVAETVTETVREVREEQTAFNWVAEPVAVETPAPVAEVAVVEPVVVAAEPEPAPVVEA
PVVAEVAAPVVEAAPASALTPSGRAPNDPREVRRRKREEERLQKEAELAAAAAPVAVEVA
PVVAEVVEAAPAPAAEVAAEPADSVIDEAPRSVQEAVEQHEQAQEKEHEPKPLV
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaagacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctggttctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggtgaagagcgcaacgaactgcgtgaagccctgaacggtctggttgcaccggcc
gacatgggtctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactctggaccgccatcaaagaagcctcgctggatcgctcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtc
gagctgccttccggtggttccatcgttatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagccgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcaagttggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatcgctcggcgaaagcagtggcatcgtt
tgcccgcgttgcaacggcaccggcatcatccgtgatgttgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcacaagtg
ccaattccggtcgcagccttcctgcttaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgcatcgtcattctgccgaacgatcacctcgaaacgccgcacttc
gaagttcagcgcctgcgtgatgacagcccggaagccagcatcaaccagtccagctacgaa
atcgctgctgccgctgccgaagtcgaagaagtccagccagccgctgcgacccgcaccctg
gttcgccaggaagccgcggtcaagactgcgccggcccgcgccaacgctccggttccgacc
gaagtcgtcgccgcaccggttgctgcaccggccgccgcgccagagccaagcctgttcaaa
ggcctggtgaagtcgctggtcagcctgttcgctaccaaggaagagcctgctgctccggtt
gtggttgaaaaaccagcaaccaccgagcgcccggcccgtaacgaagagcgtcgcaacggc
cgtcagcagagccgcaaccgtaacggtcgccgcgatgaagaacgcaagcctcgcgaggaa
cgtgcaccgcgtgaagaacgcgcaccacgtgagccacgcgaagcccgtgaagaaaccccg
gcagtcgctcgcgaagaacgcgctccacgtgaagagcgtgcaccacgcgcccctcgcgaa
gaacgtgcaccacgcgcacctcgtgaagatcgcaagccacgtggcgagcgtgaagaacgt
gttcgtgaactgcgtgaaccgctggacgccgccgctccggctgctgctgccgctaccgct
accgctgctgctgaagagcgtccagctcgtcagccacgcgaagagcgtgcgccacgtcct
ccgcgtgaggagcgtcaaccacgcgccgagcaagccgctgccgccgttgctgaagaagag
ctgactggcaacgaagagcaactgcaggaagacggtcaggaaggcgccgaaggcgatcgt
ccacgccgccgctcccgtggccagcgtcgtcgcagcaaccgtcgcgagcgtcaacgcgat
gccaacggcaacgtgatcgaaggttcggaagaatccgagtccgccgaaggtaacgaaggc
gccgaagcaccaagcgctgccgatctggccgctggcctggctgttaccgcagccgttgcc
agcaccgtgatcagcgctccggccgaagcacaggccaacgagcaagccgaacgcgccact
gccgccacactggaaactgctccagtcgaagcgccagtcgttgaagcgaccacgcctgta
gaagtaactgccgctccggaagtcgaagtggcaccggtttgtgaagcacagcctgaagtc
gaagctgccgctgagcctgccgttgttgctgaaacgcctgccgtggttgcagagccggtt
gttgaaaccgtcgctgaaaccgtgaccgaaaccgttcgtgaagttcgcgaagagcaaacc
gctttcaactgggttgccgagccggtagcggtcgaaacgccagcgccagtcgctgaagtt
gcggttgtcgagcctgttgttgtggctgccgaaccagagcctgctccggtcgttgaagcc
cctgttgtcgccgaagtggctgcaccagtggttgaagctgccccggccagtgccctgaca
ccaagtggccgcgcacctaacgacccgcgtgaagtgcgtcgtcgcaagcgtgaagaagag
cgcctgcagaaggaagccgaactggctgccgctgctgctccggtcgctgtcgaagtggca
ccggttgttgctgaagtcgtcgaggctgctcctgccccggctgctgaagtggctgccgaa
ccagctgactccgtgatcgacgaagctccacgctccgttcaggaagcggtagagcaacac
gagcaagcccaggaaaaagagcacgagcctaaacctctcgtctga
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