Pseudomonas sp. MM213: K5R88_17585
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Entry
K5R88_17585 CDS
T11312
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psmd Pseudomonas sp. MM213
Pathway
psmd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psmd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5R88_17585 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmd03021
]
K5R88_17585 (rpoA)
03400 DNA repair and recombination proteins [BR:
psmd03400
]
K5R88_17585 (rpoA)
Enzymes [BR:
psmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5R88_17585 (rpoA)
Transcription machinery [BR:
psmd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5R88_17585 (rpoA)
DNA repair and recombination proteins [BR:
psmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5R88_17585 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
UCP07640
LinkDB
All DBs
Position
complement(3894214..3895215)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacaccccgccatattgatgtgcaggttgtcagt
ccaacccgcgccaagatcactctcgagcctctcgagcgtggtttcggccacaccctgggc
aacgcgctgcgccgcatcctgttgtcctcaatgcccggctgtgcagtagtcgaggccgag
attgacggtgtactccatgagtacagcgcaatcgaaggcgtacaggaagacgtaattgaa
atcctgttgaaccttaaaggtctggctatcaagctgcacggtcgtgacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaaccccgatcacgtaatcgctaacctggcgtctaacggcgccctgaac
atgaagctcaccgtagctcgtggtcgtggttatgaaccggcagactcgcgtcagagcgat
gaagacgaaagccgcagcatcggtcgcttgcagcttgactcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgtactaacctggacaagctg
gttattgatctggaaaccaacggtactctggatcctgaagaggctatccgtcgcgctgca
accattctgcaacagcagttggctgcgttcgtcgacctcaaaggtgacagtgagccagtg
gttgtcgagcaggaagacgagatcgatccgatcctgcttcgcccggttgacgatctggaa
ctgactgtacgttcggctaactgccttaaggcggaaaacatctactacatcggtgacctg
attcagcgtaccgaagtagagctgttgaagactccgaaccttggcaagaaatccttgact
gaaatcaaggacgttctggcctcccgcggtctgtccctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaggacgacaaggcgactgcctga
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