Pseudomonas sp. MM213: K5R88_25025
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Entry
K5R88_25025 CDS
T11312
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psmd Pseudomonas sp. MM213
Pathway
psmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5R88_25025 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmd03019
]
K5R88_25025 (pnp)
03016 Transfer RNA biogenesis [BR:
psmd03016
]
K5R88_25025 (pnp)
Enzymes [BR:
psmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K5R88_25025 (pnp)
Messenger RNA biogenesis [BR:
psmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K5R88_25025 (pnp)
Transfer RNA biogenesis [BR:
psmd03016
]
Prokaryotic type
tRNA degradation factors
K5R88_25025 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
TraK_C
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
UCP09034
LinkDB
All DBs
Position
5536850..5538955
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA
TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtagtcggtgccaagcaagccgatccaggcaagggcttcttccctctgtcc
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggtagtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgcgctggccatc
tccggcattcctttcgatggcccgatcggcgctgcccgcgttgcgttccacgaaagcacc
ggctacctgctgaacccgacttacgaacaactgaaagcatcgagcctggacatggtcgtt
gccggtacttcggaagccgttctgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgtttgctcacgacgagttccaggtggtgatcaacgccgtc
aaggaactggccgccgaagctgccaagccgacctggacctgggctccacaaccagaagcc
actgctctgctgggcgctatccgtgccgagttcggcgacgcgatctcccaggcttacacc
atcaccatcaaggccgaccgttacgctcgcctgggtgagctgaaggatcaggttgttgcc
aagctgtccggtgaagaaggccagccttcttccagcgaagtcaaagctgctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgc
gacaccaagaccgtacgtcctttgaacatcgaagtcggtgttctgccaaagacccacggt
tcggctctgttcacccgtggcgaaacccaggctctggtcgttgcaacactgggcaccgcc
cgtgacgcacaactgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtaggtgagtgtggtcgcatgggtggcgctggtcgtcgc
gaaatcggtcacggccgtctggcccgccgttcggttcaggccatgctgcctgctgccgac
gtgttcccgtacaccatccgtgttgtatcggaaatcaccgaatccaacggttcgagctcc
atggcttcggtctgcggcgcttccctggccctgatggacgccggcgttccgatgaaggca
ccggttgccggtatcgcgatgggtctggttaaagaaggcgagaaattcgctgtcctgacc
gacatcctgggtgacgaagaccacctcggcgacatggacttcaaagtagctggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgctctgggccaagccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcattggccagtcgcgtaccgagctgtcggaaaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccattcgtgcgatc
tgtgaagagaccaaagcttcgatcgatatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcagcacgtcagcgcgttctgggcatcaccgcagaagct
gaaatcggcaagatctacgtcggtaaagttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgccgggcaaggacggtctggttcacatctcgatgctgagcgatgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctctccatcaaagacgtagcagcagccaaggcttcgggc
gtttaa
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