Pseudomonas sp. ML2-2023-3: V6P94_02340
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Entry
V6P94_02340 CDS
T10712
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6P94_02340 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psml03021
]
V6P94_02340 (rho)
03019 Messenger RNA biogenesis [BR:
psml03019
]
V6P94_02340 (rho)
Transcription machinery [BR:
psml03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V6P94_02340 (rho)
Messenger RNA biogenesis [BR:
psml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V6P94_02340 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
Spore_III_AA
NACHT
AAA
Motif
Other DBs
NCBI-ProteinID:
WWT71534
LinkDB
All DBs
Position
complement(529985..531244)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTVRMKMEIGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNISRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgttccgctgatgcctcttacctggccggcccagacgatatctac
gtctcgccaagccagattcgacgcttcaacttgcgcactggcgacaccatcgtcggtaaa
atccgtccgccaaaagaaggcgagcggtacttcgcactgctgaaagtcgacacgatcaac
tacgatcgtccagagaacgcgaaaaacaagattctcttcgagaacttgaccccgctgttc
ccgaccgtacgcatgaagatggaaatcggtaacggttccaccgaagatctgaccggtcgt
gtcatcgacctgtgtgcaccgatcggtaaaggtcagcgcggtctgatcgttgctccgcca
aaagcgggcaagaccatcatgctgcagaacatcgcgtcgaacatttcgcgtaacaaccct
gaagtgcacttgatcgttctgttgatcgacgagcgcccggaagaagtaaccgaaatgcag
cgtaccgtgcgcggcgaagtggttgcctccaccttcgacgagccaccaacccgccacgtg
caggttgctgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtattgaccggtggtgtcgatgctcacgcccttgagaagccaaagcgtttc
ttcggtgctgcgcgaaacatcgaagaaggcggctcgctgaccatcatcgctaccgcgctg
gttgaaaccggctcgaagatggatgaagtgatctacgaagagttcaaaggcaccggcaac
atggaactgcctctggaccgcaagatcgctgaaaagcgcgtcttccctgcgatcaacatc
aaccgttccggcactcgccgcgaagagttgctgaccgcggacgacgagctgcaacgcatg
tggattttgcgcaagctgttgcacccgatggacgaagtcgcagctatcgagttcttgatc
gacaagctgaaacagaccaagaccaacgatgagttcttcctgtcgatgaagcgcaagtaa
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