Pseudomonas sp. ML2-2023-3: V6P94_04595
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Entry
V6P94_04595 CDS
T10712
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6P94_04595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psml03019
]
V6P94_04595
Enzymes [BR:
psml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6P94_04595
Messenger RNA biogenesis [BR:
psml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6P94_04595
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WWT71953
LinkDB
All DBs
Position
993398..995245
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AA seq
615 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
EKLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACVFGGVGTN
PQVQALARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNTTVERIEQRVFRLPATHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGAV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIADGDLMGFDSSTVEAEKPEVRERPDVRNPRNTPRGPRGDGPGNPGGGG
GRKDKGKEKSKEKPAAARSERPAREQKPREAQPAREQRQPAPRSDANRAPDEFRDDDVDN
FGNRADYVSPYQNKNNQSRGRRPGAPAQGTGAAPAARTGGRQNAPRTGSGATTGTPPAKR
SGPRSGAPRDGQARRENRPARDDARQEPAVKGPRENQPKIMHKESKSDRFPTPEQLDQLP
NRPRGEKPALLTRNR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccattgaagctgcgggc
tataccgagcctactccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgctcttccgatcctg
gaaaagctgtttcccaatggccacccggacaaatcccagcgccacggcccacgccaacca
cgcgtgctggtcctgacaccgacccgcgaactcgccgcccaggtgcacgagagcttcaag
ctctatgcccgcgatctgaagttcgtcagcgcctgcgtgttcggcggtgtgggtaccaac
cctcaggtccaggctctggcccgcggtgttgacgtactggttgcctgcccgggtcgtttg
ctcgacctggccggtcaaggcagcgtagatctgtcccacgttgaaatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaaaaaagtcctcgcgcgt
ctgccagccaagcgtcaaaacctgctgttttcggcgacgttctccaaggacatcaccgat
ctggccggcaagctgctgcgcaacccggaacgtatcgaagttacgccacccaacaccacg
gtcgagcgtatcgagcaacgggttttccgtctgcccgctacccacaagcgtgccctgctg
gcgcacttgatcaccgcaggcgcctgggaacaggttctggtctttacccggaccaagcac
ggtgccaaccgtctggccgagtacctggacaagcacggcctcagcgctgtggccatccac
ggcaacaagagccagaacgcacgaaccaaagccctggccgactttaaagccggtgccgta
cgcattctggtagcgaccgatatcgccgctcgcggcctggatatcgatcagttgccacac
gtggtcaacttcgagctgccaaacgtcgacgaagattacgttcaccgtatcggccgtact
ggccgtgccggtcgttcgggtgaggccatctcgctggtcgctccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgacccgccagaaaatcgccgatggtgatctgatgggtttt
gactccagcaccgtagaggccgaaaagcctgaagtacgcgagcgtccggatgtgcgtaac
ccgcgcaacacgccacgcggtccacgtggcgacggtccgggtaacccgggcggtggcggc
ggtcgtaaagacaagggcaaggaaaagagcaaagaaaaaccggcggctgctcgcagcgag
cgtccagctcgtgagcaaaagccacgcgaagctcagcctgcccgtgagcagcgtcagcca
gcgcctcgttcagacgccaaccgtgcgccggacgagttccgtgatgacgatgtggacaac
tttggtaaccgcgctgattacgtcagcccgtaccagaacaaaaacaaccagagccgcggc
cgtcgtccgggagctccggctcaaggcactggcgcagcacctgccgcgcgtaccggtggt
cgtcagaatgctccgcgtactggcagcggcgctaccactggcacaccgcctgccaagcgc
agcggtccacgcagtggtgccccgcgtgacggtcaagcccgtcgcgaaaaccgcccggcc
cgtgacgatgcccgtcaagagccagcggttaaaggcccacgtgagaatcagccgaagatc
atgcacaaagagtcgaaaagcgatcgcttcccgacgcctgagcagctcgatcaactgccg
aaccgccctcgtggcgagaagccggcactgctgacgcgtaaccgctga
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