Pseudomonas sp. ML2-2023-3: V6P94_05280
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Entry
V6P94_05280 CDS
T10712
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V6P94_05280 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psml03021
]
V6P94_05280 (rpoD)
Transcription machinery [BR:
psml03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6P94_05280 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WWT72084
LinkDB
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Position
complement(1157399..1159246)
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AA seq
615 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDPKVKAEGDDEEDDKEESSEEEEEVESGPDPIIAAQRFGAVSDQMELARKALKKH
GRGSKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMP
RTDFLRLFPGNEVDESWSDALAKGKSKYAEAIGRLQPDIIRCQQKLSALEAETGLKIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATRDVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctcggccgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcccgaagatatttcagatccg
gagcaagtggaagacatcatccgcatgattaatgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgatgccgacaccgacgaagcagctgctgaa
gaagcagctgccgcgttggcggcagtagagaccgacattggtcgtactaccgaccctgtg
cgcatgtatatgcgtgaaatgggcacggtagaactgctgacacgtgaaggcgaaatcgaa
atcgccaagcgtatcgaagaaggcatccgtgaagtgatgggcgcaattgcgcacttccct
ggcacggttgaccatattctctccgagtacactcgcgtcaccaccgaaggtggtcgcctg
tccgacgttctgagcggttatatcgacccggacgatggtattgcgccgcctgcagccgaa
gtgccgcctcctgtcgacccaaaggtgaaagccgaaggtgatgacgaagaggacgataag
gaagagtccagcgaagaagaggaagaggtcgaaagcggccccgatccgatcatcgcggct
cagcgctttggcgccgtttccgatcagatggaactcgctcgcaaggcactgaaaaagcac
ggccgtggcagcaagcaggcaattgccgagctggttgcactggcagagctgttcatgccg
atcaaactggtcccgaagcaattcgaaggcctggttgagcgtgttcgcagcgccctggag
cgtctgcgtgcacaagagcgcgccatcatgcagctgtgtgtacgtgatgcacgcatgccg
cgtaccgatttcctgcgcctgttcccgggcaacgaagtcgacgaaagctggagcgacgcg
ctggccaaaggcaaaagcaaatatgctgaagccattggtcgcctgcaaccggacatcatc
cgttgccagcaaaagctgtctgccctggaagcagaaaccggcctgaagattgccgagatc
aaggacatcaaccgtcgtatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagaa
atggttgaagccaacttgcgtctggttatctccatcgccaagaagtacaccaaccgtggc
ttgcagttcctcgatctgatccaggaaggcaacatcggcttgatgaaagcggtagacaag
tttgaataccgccgcggctacaaattctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccgccagatgttgcaggaaatgggtcgcgaaccg
accccggaagagctgggcgaacgcatggaaatgccagaggataaaatccgtaaggtattg
aagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcccat
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtagccactgttgag
agccttaaagaagcgacacgcgatgtactcggcggcctcacagcccgtgaagccaaggta
ctgcgcatgcgtttcggtatcgacatgaataccgaccacaccctcgaggaggttggtaaa
cagttcgacgttacccgtgaacggattcgtcagatcgaagccaaagcgttgcgcaagctg
cgccacccgacgagaagcgagcatttgcgctccttcctcgacgagtga
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