Pseudomonas sp. ML2-2023-3: V6P94_05610
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Entry
V6P94_05610 CDS
T10712
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V6P94_05610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psml03021
]
V6P94_05610 (rpoB)
03400 DNA repair and recombination proteins [BR:
psml03400
]
V6P94_05610 (rpoB)
Enzymes [BR:
psml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V6P94_05610 (rpoB)
Transcription machinery [BR:
psml03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V6P94_05610 (rpoB)
DNA repair and recombination proteins [BR:
psml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V6P94_05610 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WWT72142
LinkDB
All DBs
Position
1223132..1227205
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDKFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVQGES
ISLELVPHRLRGEIAAIDITDDKGKVIVEQGRRITARHINQLEKAGIKELVMPLDYVLGR
TTAKAIVHPATGEIIAECNTELTTEILAKIAKGQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGYNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGRIAEGGAGLKKGQEITNEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIIDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINLMIEEQRKVADLRKFLHEIYNEIGGRQESLDDFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLRLADLPDSGQMTLTDGRTGNQFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatctcttggcaatccagctggattcgtatcgtgaattcttgcag
gcgggagcgactaaagataagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcttgggc
gagccggcatttgatgtcaaagaatgcgtgttgcgtggcgtaacgtacgccgtacctttg
cgggtaaaagttcgtttgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgtgtaattgtttcccagctgcaccgttccccgggcgtgttc
tttgaccacgaccgcggcaagacgcacagctccggtaagctgctttattctgcgcgtatc
attccttaccgcggttcgtggttggactttgagttcgatccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgcctgcatcggtattgctgcgtgcgctgggctatacc
actgaacaagtgctggacgcgttctacacgaccaacgtgttccacgttcagggcgaaagc
attagcctggaactggttccgcatcgtctgcgcggtgaaatcgcggccatcgatattacc
gatgacaaaggcaaggtgattgttgagcagggtcgtcgtattactgctcgccacatcaac
cagctggaaaaagccggtatcaaagagctcgttatgcctctggactatgtcctgggacgc
acaacggccaaagctatcgtgcatccggctaccggcgaaatcattgctgagtgcaacacc
gagctgacgactgaaatcctggcaaaaatcgccaagggccaggttgttcgcatcgagacg
ttgtacaccaacgatatcgactgtggtccgttcgtttccgacactctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgtgcaaagaagacatcgttgctgtgctgaagaccctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgagaaccagttccgcgttggcctggtgcgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttcgagccagctgtcccagttcatg
gaccagaacaaccctctgtccgagatcacccacaagcgccgtgtttctgcactgggcccg
ggcggtttgacgcgtgagcgtgccggctttgaagttcgtgacgtacacccgactcactac
ggccgtgtttgcccgattgagacgccggaaggtccgaatattggtctgatcaactccttg
gctgcctatgcgcgcaccaaccagtacggcttccttgaaagcccgtaccgtgtggttaaa
gacgcactggtaactgacgagatcgttttcctgtccgccatcgaagaagccgatcacgtg
atcgctcaggcctcggccacgatgaacgacaagaaagtcctgatcgacgagctggtagct
gttcgtcacttgaacgaattcaccgttaaggcgccggaagacgtcaccttgatggacgta
tctccgaagcaggttgtttcggttgcagcgtcgttgattccgttcctcgagcacgatgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccgaccctgcgcgct
gacaagccgctggtaggtactggcatggagcgtaacgtagctcgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactctgttgatgccagccgtattgtggttcgt
gttgctgatgatgaagttgagaccggcgaagctggtgttgatatctacaacctgaccaag
tacacccgctccaaccagaacacttgcatcaaccagcgtccgctggtccgcaagggtgat
cgtgtacagcgcagcgacatcatggctgacggtccgtccaccgatatgggtgaactggcg
ttgggtcagaacatgcgtatcgcgttcatggcctggaacggttacaacttcgaagactcc
atctgcctgtcggaacgagttgttcaagaagatcgctttaccacgatccacattcaggaa
ctgacctgtgtggcacgtgacaccaagcttgggcctgaagagatcactgcagatatcccg
aacgtgggtgaagctgcactgaacaaactggacgaagccggtattgtttacgtaggtgct
gaagttggcgctggcgacattctggtaggtaaggtcactccgaaaggcgagactcagctg
actccagaagagaagctgttgcgcgcaatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaaaggtactgtaatcgacgtacaagtcttcact
cgtgacggcgttgagcgtgatgctcgtgccctgtcgatcgagaagacccagctggacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggcgctacttttgaacgtctg
cgctctgctctggttggtcgtattgccgagggcggtgccggtctgaagaaaggccaggaa
atcaccaatgaaatcctggacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaagatgctctgaatgagcagcttgaaaaagctcaggcctacatcatcgatcgccgtcgt
ctgctggatgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccgggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggt
gacaagatggctggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgtacgatgccaatggcaccccggttgatgtggttctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaactcacctgggcctcgcggctaaaggt
ttgggcgagaagatcaacctcatgattgaagaacaacgcaaggtcgctgacctgcgcaag
ttcctgcatgagatctacaacgaaattggcggtcgtcaagaaagcctggatgacttctcc
gatcaggaaatcctggatctggcgaagaaccttcgtggcggtgtgccgatggctaccccg
gtgttcgacggtgccaaagaaagcgaaatcaaggcaatgcttcgtttggcagatttgccg
gacagcggccagatgacgctgacagacggtcgtaccggcaaccagtttgagcgcccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcatgct
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgtttcggggagatggaggtctgggcgctggaagcctacggcgcggcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
