Pseudomonas sp. ML2-2023-3: V6P94_09125
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Entry
V6P94_09125 CDS
T10712
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psml Pseudomonas sp. ML2-2023-3
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psml03009
]
V6P94_09125 (rlmD)
Enzymes [BR:
psml01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
V6P94_09125 (rlmD)
Ribosome biogenesis [BR:
psml03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
V6P94_09125 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_23
TRM5-TYW2_MTfase
PCMT
Methyltransf_15
Cons_hypoth95
RrnaAD
DREV
Methyltransf_12
UPF0020
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
WWT72796
LinkDB
All DBs
Position
1965356..1966708
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AA seq
450 aa
AA seq
DB search
MAKQERGLRFQPAGGTKAPQVPAGKKQRLNIERLANDGRGIAFIEGRTWFVSGALAGEEV
EARVLGAHGKIVEARTERVFKASDIRRVAPCAHAGKCGGCSVQHLPHEEQLALKQRMLTE
QLSRVAGVEPEEWAPPLAGPEFGYRRRARIAVRWDARAKRLEVGFRAAGSQDIVAIDHCL
VLVQALQPIMTGLPAMLRQLSNPKALGHVELFSGSAIAVLLRHMAPLNDGDMKILQDFCL
THDAQLWLHGEGEPQPVDLTRTLGYRLEQWDLELAYRPGDFVQVNAGVNEAMVAQAIKWL
APQADERILDLFCGLGNFALPLAQKVREVVAVEGVATMVERAAQNAVSNNLQNAVFFQAD
LSQPLVDAAWAKDGFCAVLLDPPRDGAYEVVRKLSGLGARRLVYVSCNPATLARDTVELM
KQGYRLKRAAILDMFPQTAHVEAMALFEAD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggctaagcaagagagaggcctgcgcttccagcctgctggcggcaccaaggccccgcaa
gtgcctgcgggcaagaaacagcgtttgaacatcgagcgtttggccaacgacggccggggt
attgcctttattgaagggcgtacctggtttgtgtcgggagccctggccggtgaagaagtt
gaagcccgggtgctgggcgctcacggcaaaatcgttgaagcccgtaccgagcgcgtgttc
aaggccagcgacatccgccgcgtggcgccctgtgcccacgcgggcaagtgtggcggttgc
agcgtgcagcatttgccccatgaggagcagcttgcactgaaacagcgcatgttgaccgag
caactgtcccgtgtggccggtgtcgaacctgaagagtgggcgccccccctcgcaggtccg
gaatttggctatcgccgccgtgcacgcatcgccgtgcgctgggatgcgcgggccaagcgt
ctggaggtaggttttcgagcggccggtagtcaggacatcgtcgccattgatcactgtttg
gtcctggtacaggctttgcaacctatcatgacggggctgcccgccatgttgcgccagttg
agcaatcccaaggcccttggccatgtcgagttgttcagcggttcggcaattgcggtgttg
ctgcgtcacatggcgccgctcaacgatggggacatgaaaatcctgcaggatttctgcctc
acccatgacgcccagttgtggctgcacggtgaaggtgaacctcaaccggtcgatttgacc
cggaccctgggctaccgtttggaacagtgggatctggagctggcgtatcgtcccggtgat
tttgtccaggtcaatgctggcgtcaatgaagccatggtggctcaagcaataaagtggctt
gctccacaagctgacgaacggattcttgacttgttctgtgggctgggtaacttcgcgtta
ccactggcgcaaaaagtccgcgaagtggtggcagttgaaggtgttgcgaccatggtcgaa
cgcgcagcgcaaaacgcggtcagtaacaacctgcaaaatgcagtgttttttcaggctgac
ttgtcgcagccgctggtggatgcagcctgggccaaggatgggttttgtgccgtgctgctc
gacccgccccgtgacggcgcctatgaagtggtacgcaagctgtctggcctgggagccagg
cgtttggtgtatgtgtcgtgtaacccggccacgctggcacgggatacggttgaattgatg
aaacagggttaccggttaaaacgtgccgcaatcctcgacatgtttccgcaaacagcgcat
gtcgaggcgatggcgttatttgaagcagactag
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