Pseudomonas sp. ML2-2023-3: V6P94_09605
Help
Entry
V6P94_09605 CDS
T10712
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6P94_09605 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psml03019
]
V6P94_09605 (rne)
03009 Ribosome biogenesis [BR:
psml03009
]
V6P94_09605 (rne)
Enzymes [BR:
psml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
V6P94_09605 (rne)
Messenger RNA biogenesis [BR:
psml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V6P94_09605 (rne)
Ribosome biogenesis [BR:
psml03009
]
Prokaryotic type
rRNA processing factors
V6P94_09605 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF8143
TcdA_TcdB
MIF4G_like
Motif
Other DBs
NCBI-ProteinID:
WWT72879
LinkDB
All DBs
Position
complement(2060729..2063950)
Genome browser
AA seq
1073 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPPRTSAPVPAEVV
AAPAAPAPAATISEPSLFKGLVKSLVSLFASKEEPVAPTVVEKPATPERPARNEERRNGR
QQSRNRNGRRDEERKPREERAAREPREERTSREETPVVAQAPREERAPRPPREERAPRAP
REDRKPRGEGREERVRELREPLDAAPAVVAGAAAAVVAEERPARPPREERQPRAPREERA
PREEQVVAAAEDEEVLSSEEQSQDETQDNAEGDRPRRRSRGQRRRSNRRERQRDANGNVI
EGSEENSEEGNAQNAPATTLEIAAGLAVTEAVASSVISAPAEAQAHQQAERATEATQESA
PAETVVAVEAAQEVAVVEAPAAPAPVVEATAAVEATVIETPVAEAPVVEAVTPIEAIKAP
EVEVAPAQEAHPEVQAVAEPVVAAPEPVVEVVAQTPVVETPAVEAPAFEKAPEPAKEVRV
VREPVAEPAVVQAAPAAEPATPEVVAVEAVVETVVTAQPAPVEAEVVVASEVVEVVIAAP
VVSAPSNGRAPNDPREVRRRKREEAAAAAAAAAHAPASEAVAQEQEHESKPLA
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacctgaagagttgcgcgttgcactggtagatggccaacgc
ctctacgacctggacatcgagtcgggtgcacgcgagcagaagaaagccaacatctacaaa
ggccgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaggaaatctcccgcgagtacttcaagaaggctcccgaa
ggccgcgtaaacatcaaggacgtcctgagcgaaggccaggaagttatcgtgcaggtcgag
aaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctcgccggccgt
tacctggttctgatgccgaacaacccgcgtgccggtggtatctcccgtcgcattgaaggc
gaagagcgcaacgaactgcgtgaagcgcttaacggcctgattgcccctgccgacatgggt
ctgatcgtacgtactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggactgccattaaagaagcctcgctggatcgctccgcgccattc
ctgatctaccaggaaagcaacgtgatcatccgcgctatccgtgattacctgcgccaggac
atcggcgaagtactgatcgacagcgttgaagcccaggacgaagccctgaccttcattcgc
caggtgatgccgcagtacgccagcaaaatcaaactctacgaagacagcgttccgctgttc
aatcgtttccagatcgaaagccagatcgagaccgccttccagcgtgtcgttgaactgcct
tccggcggctccatcgttatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcccgcgccaccaaaggtagcgatatcgaagaaaccgcgctgcaaaccaaccttgaagcg
gctgaagaaatcgcccgtcagttgcgcttgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccagccaaaaaccagcgcgccgtggaagaaaaagtccgcgaatgc
ctggaagcagaccgtgcccgcgtacaagtcggccgtatctcgcgcttcggcttgctggaa
atgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtctgcccacgc
tgcaacggcaccggcatcatccgtgacgttgagtcgctgtcgctggccatcctgcgcctg
atcgaagaagaagccctgaaagaccgtactgccgaagtacgcgcccaggtgccaatcccg
gttgctgcattcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgtacc
cgtgcccgcatcgtcatcctgccgaacgaccacctcgaaacgccgcacttcgaagttcag
cgcctgcgtgatgacagcccggaagcccacaccaaccagtccagctatgaaattgctgcc
gctgccgctgaagtggaagaagtccagcctgctgcagctacccgcactctggttcgccag
gaagccgcggttaaaactgcaccgccacgcacctcggctccggttcctgccgaagtcgtc
gctgccccggccgcacctgcacccgcggcaaccatctccgagccaagcctgttcaaaggc
ctggtcaagtcattggtgagcctgttcgcctccaaggaagagcctgttgctccgaccgtg
gtagagaagccagccacccctgagcgccctgcacgcaacgaagagcgtcgcaacggccgc
cagcaaagccgtaaccgcaacggtcgtcgtgacgaagaacgcaagccacgtgaagagcgt
gctgctcgcgaaccacgtgaagaacgtacatcccgcgaagaaactccggttgttgctcaa
gcacctcgcgaagagcgcgcaccgcgtccacctcgtgaagagcgcgccccacgcgcaccg
cgtgaagaccgcaaacctcgtggcgaaggccgtgaagagcgcgtacgcgaactgcgtgaa
cctctggacgcagcgcctgctgtcgttgccggcgccgcagctgcagtcgtagccgaagaa
cgcccggctcgcccgcctcgtgaagaacgccagcctcgcgcccctcgcgaagaacgcgct
ccacgtgaagagcaagttgtggctgctgctgaagacgaagaagtgctgtccagcgaagag
caatcccaggacgagacacaggacaacgccgaaggcgatcgtccacgtcgccgctcccgt
ggtcagcgtcgtcgcagcaaccgtcgtgaacgtcagcgtgatgcaaacggcaacgtgatt
gaaggctcggaagagaacagcgaagaaggcaacgcccaaaacgctcctgctaccaccctt
gaaatcgctgccggcctggccgtaacagaagccgttgccagctcggtaatcagcgccccc
gctgaggcccaggctcaccaacaggcagagcgtgcgactgaagcaacccaggaatcggcc
ccggctgaaaccgtggttgccgttgaagctgcgcaggaagtggctgttgtagaagcacct
gccgctccagctccagtggttgaagccaccgccgctgtagaagcaaccgttattgaaact
ccagttgcagaagcaccggttgtcgaagccgtaacgccgatcgaagcgatcaaggcaccg
gaagttgaagttgcaccggctcaagaagcacaccctgaagtccaggctgttgccgagcca
gttgtagcggctccagagcctgtagtcgaagtcgtggcgcaaaccccggtcgttgagacg
ccagcagtcgaagcacctgctttcgaaaaagcaccggagcctgccaaggaagtccgcgtt
gttcgcgagccagttgccgagcctgccgttgttcaagcagcgcctgcagcagaaccagcc
acccctgaagtggtagcggttgaagccgtagtcgagaccgtagtcaccgcacagccggct
ccagttgaagctgaagttgttgtggcgtctgaagtggttgaagtcgtgattgcagctccg
gttgtcagcgctccaagcaacggtcgtgctcctaacgacccgcgcgaagtccgtcgtcgc
aagcgtgaagaggctgctgcagccgccgctgcagcagctcatgcacctgcaagcgaagcc
gtagcccaggaacaggaacacgagtctaaacctctcgcctaa
DBGET
integrated database retrieval system
