Pseudomonas sp. ML2-2023-3: V6P94_10200
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Entry
V6P94_10200 CDS
T10712
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6P94_10200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psml03019
]
V6P94_10200
03009 Ribosome biogenesis [BR:
psml03009
]
V6P94_10200
Enzymes [BR:
psml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6P94_10200
Messenger RNA biogenesis [BR:
psml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6P94_10200
Ribosome biogenesis [BR:
psml03009
]
Prokaryotic type
rRNA helicases
V6P94_10200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
WWT72991
LinkDB
All DBs
Position
2184896..2186566
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AA seq
556 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQHQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLTPLVADAESTHGDLLDRLIADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNSAPRERSERSGDRPDRGDRERRAPVPLAEGRA
RCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEVGLEGLLAKLKD
TRVAGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaacattcttgcagct
gtcattgcgactggctacgaagaaccttcggctattcagcatcaatcgatcccgatcatt
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gcactgccgatcctgcaccgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgcccctatgggtccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagttctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaaactgggtttcatggacgatcttgaagttatcttcaaggctcttcctccaacc
cgtcagaccgtattgttctcggcaaccttgccgcagtcgatccgtgccattgccgagcgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagttgaagatttcgacgccctgatcatgttcgtacgcaccaagcaagcgaccctggat
ctggccagcgcccttgaagccaaaggctacaaagctgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgtaatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgctcgtggtctcgatgttccacgtatcactcacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtacaggccgtgcaggt
cgcgaaggtcgcgcactgctgctggtaactcctcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgctgaagtccgcctgccggatgctcaagctgttctc
gatgctcgcatcaagaagttgaccaacagcctgactccgctggttgctgacgctgaatcg
actcacggtgacctgctggatcgcctgattgccgatatcggttgcagcccgcgtgctctt
gccgctgctctgctgcgcaaggcaaccaacggtcaggccctgactctggctgccatcgag
cgtgatcgtccactggtgccgaacagcgcgccacgtgagcgttcagagcgttcgggtgac
cgtccggatcgtggtgatcgtgagcgtcgtgctccggttccattggctgaaggccgtgct
cgttgccgtaccgctctgggtgcgcgtgatggcatcgctgccaagaacctgctgggcgct
atcctcaacgagggtggcctggcacgtgaagcaatcggtcgcatccaggtgcgtgacagc
ttcagcctggtagagctgccggaagtgggtctggaaggtttgctggccaaactgaaagac
acccgcgttgctggcaagcagctcaagctgcgtcgctaccgcgaagattaa
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