Pseudomonas sp. ML2-2023-3: V6P94_24445
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Entry
V6P94_24445 CDS
T10712
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psml Pseudomonas sp. ML2-2023-3
Pathway
psml03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
V6P94_24445 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psml03400
]
V6P94_24445 (recD)
Enzymes [BR:
psml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
V6P94_24445 (recD)
DNA repair and recombination proteins [BR:
psml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V6P94_24445 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
Viral_helicase1
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_17
AAA_16
TraI_hel_assoc_N
AAA_28
T2SSE
DEAD
NTPase_1
AAA_25
AAA_5
AAA
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WWT71096
LinkDB
All DBs
Position
complement(5293646..5295730)
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AA seq
694 aa
AA seq
DB search
MSRSFAELLPTPLTAESLALLQPLGRADDLLLLLERWVERGWLRALDKAFVAFLHERDPQ
GDPLVLLAAALTSHQLGHGHVCLDLFETLKEPDFALSLPPEGDVQTGAMLLPSQLLEALE
GDAWCKALQASPLVEHAGQPSADAASRPLVLSERRLYLRRYWAYERRIDSALRQRLSQVE
ATPDDLPARLNGLFGSPAQHALIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALL
QAPAVEAGAPLRIRLAAPTGKAAARLTESISLQVKSLEVDDKVRQKIPSDVTTVHRLLGS
RPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPAHARLVLLGDKDQLASVEA
GAVLGDLCRDAEAGWYTPQTRAWLEQVSGENLSASDLQQDLEGTHPLAQQVVMLRHSRRF
GEGSGIGQLSRLVNQQLPREARALLAAGTHADLFALPLKGEQDRGFERLALEGRGAEAKG
YRHYLEVLREQRPTGETGLEDPCWAVWAGNVLQAFEAFQVLCAVRKGPWGVEGLNERITR
ALFARKLIDSDQHWYEGRPVLMTRNDYGLGLMNGDIGIALKLPERDGLTQRHVLRVAFAR
NDGQGGIRFVLPSRLNDVETVYAMTVHKSQGSEFSHTALVLPEALNPVLTKELIYTGITR
AKNWFSLVEPRTGVFEEAVQRKVKRLSGLMLGLG
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttcgtttgccgaactgttgcccacgccgttgacggccgaaagccttgccctg
ctgcaacccttgggccgtgccgacgatctgctgctgttgctggaacgctgggtcgagcga
ggctggctgcgtgcgctggacaaagcgttcgtcgcgttcctgcatgagcgcgatccgcaa
ggcgatcctttggtgttgctggcggcagcgttgaccagtcatcagttgggccacggtcat
gtgtgtcttgatttgttcgagaccctgaaggaacccgactttgcactgtccttgccaccc
gagggcgatgtgcaaaccggcgccatgctgctgccctcgcagttgcttgaggcgctggag
ggcgacgcgtggtgtaaggccctgcaagccagcccgttggttgagcacgcgggtcagcca
tcggcggatgcggccagccgcccgttggtgctgagtgagcgccgtctgtatttacgccgc
tactgggcttatgagcggcgaatcgatagcgccttgcgccaacgtctgtcgcaggttgaa
gcaacgcccgatgatttgcctgcacggctgaacggcttgttcggcagcccggcacagcat
gcgctgattgactggcaaaagctggcctgcgccctggccactcgcggtgcattcagcatt
gttaccggggggccaggcaccggcaaaaccaccaccgtggtgcgtctgctggccttgctt
caagcccctgccgtcgaagcgggggcgcccttgcgcattcgcctggccgcaccgaccggt
aaagccgccgcgcgcctgaccgagtccatcagccttcaagtcaaatccctggaagtggac
gacaaggttcggcaaaaaatccccagtgacgtgaccaccgttcaccgtctgctcggcagt
cgccccggcacgcgccacttccgtcatcacgcgggcaatcgcctgccactggacgtactg
gtggtcgacgaagcgtccatgatcgacctggaaatgatggccaacttgctcgatgcattg
cccgcccatgcgcggctggtgctgttgggcgacaaagaccaattggcgtcggttgaagcc
ggcgcggtgcttggtgatttgtgccgcgatgccgaagcgggttggtacaccccgcagacc
cgtgcctggcttgagcaggtcagcggcgaaaacctgagcgccagtgacttgcaacaagat
ctggagggtacgcatccactggcccagcaagtggtcatgctgcgtcactcgcgccgtttt
ggcgaaggcagcggtatcggccagctgtcgcgcctggtcaaccagcaactgccccgcgaa
gcacgggccctgctggcggcaggcacccacgccgacctctttgcattgcccctcaagggc
gagcaggaccgtggttttgagcgtctggcactggaagggcgcggcgctgaggccaaaggc
tatcggcattaccttgaggtgttgcgcgagcagcgccctactggcgagaccggactggaa
gacccttgttgggcggtatgggcgggtaacgtgctgcaagcgttcgaggcctttcaagtc
ctctgcgccgtgcgcaagggcccctggggtgtcgaaggcctgaatgagcgcatcacccgc
gccctgtttgcccgcaagctgatcgacagtgaccagcattggtacgaaggccgcccggtc
ctgatgacccgcaacgattacggcctgggcctgatgaacggcgatatcggtatcgccctc
aagctccccgagcgtgatgggctgacccagcgtcatgtgctgcgtgtggcattcgcccgt
aacgacgggcagggcggtatccggtttgtcctgcccagtcggctcaatgacgttgaaacg
gtctatgccatgaccgtacacaaatcccaaggctcggagttctcccacaccgcgttggtg
ctccccgaggcgctcaatccggtgttgaccaaggagctgatctacaccggcatcacccgg
gccaaaaactggttcagcctggtcgagccgcgtaccggcgtctttgaagaggccgtgcag
cgcaaggtaaaacgcctgagcgggttgatgctggggctggggtaa
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