Pseudoalteromonas sp. MM1: PspMM1_01210
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Entry
PspMM1_01210 CDS
T09926
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psmm
Pseudoalteromonas sp. MM1
Pathway
psmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PspMM1_01210 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmm03021
]
PspMM1_01210 (rho)
03019 Messenger RNA biogenesis [BR:
psmm03019
]
PspMM1_01210 (rho)
Transcription machinery [BR:
psmm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PspMM1_01210 (rho)
Messenger RNA biogenesis [BR:
psmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PspMM1_01210 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
AAA
OB_RNB
Fungal_virus_P2_C
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BED87653
LinkDB
All DBs
Position
1:complement(133060..134319)
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AA seq
419 aa
AA seq
DB search
MHLRELKDKSIKELVNLAESMGLENVARLRKQDIIFAILKAHAKGGENIFGGGVLEILQD
GFGFLRSSEASYLAGPDDIYVSPSQIRRFSMRTGDSISGLIRPPKDGERYFALLKVNEVN
FDKPENSRTKILFENLTPLHANERFRMERGNGSKEDITARVLDLASPIGRGQRGLLVAPP
KAGKTMLLQNIAQSITHNHPDVTLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKPDELQKLWILRKIVHEMSEIDAMEFLIDKLSMSKTNDEFFDSMKRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcatttacgcgaattaaaagacaagtctataaaagaacttgtaaacttagctgagtcc
atggggctcgaaaacgtagcccgcttaagaaagcaagatatcatttttgccattcttaaa
gcacacgccaaaggcggagagaatatcttcggtggcggtgtactagagattttacaagat
ggttttggttttttaagatcatcagaagcatcttacttagctggcccagatgatatttat
gtatctccaagccaaattcgccgttttagcatgcgtactggcgattctatttcagggctt
attcgcccacctaaagatggcgaacgctactttgctttattaaaagtaaatgaagttaac
ttcgataaacctgaaaactctcgcactaaaattctttttgaaaaccttaccccactacat
gcaaacgaacgttttcgtatggaacgcggtaacggcagtaaagaagacattaccgctcgt
gtacttgatttagcatcaccaattggccgtggccaacgtggtttgttagtagcaccgcct
aaagcgggtaaaacaatgctactacaaaacattgcacaatcaattacacacaatcaccca
gatgttacattaatggttttacttattgatgagcgtccggaggaagtaaccgagatgcaa
cgcctcgttaaaggtgaagttattgcatcaacgtttgatgagccagcttctcgccacgta
caagttgcagaaatggttattgaaaaagcaaaacgcttagttgagcataaaaaagatgtg
gttatcttgcttgattcaatcactcgtttagcacgtgcttacaacacggttataccttcg
tcaggtaaagtacttaccggtggtgttgatgctaatgcactgcacaagcctaagcgcttc
tttggtgccgctcgtaatgttgaagaaggcggtagcttaacaattattgctacagcgctt
atcgacacaggctctaaaatggatgaagttatctacgaagagtttaaaggtaccggtaac
atggagcttcacttaaatcgtaagattgctgaaaagcgtgtattcccagccatcgacttt
aatcgctctggtacgcgtcgtgaagagctacttactaaaccagatgagctacaaaagctg
tggattttacgtaagattgttcatgaaatgtcagagattgatgctatggagttcttaatt
gataagctttctatgagcaaaacaaacgatgaattcttcgactcgatgaaacgccaataa
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