Pseudoalteromonas sp. MM1: PspMM1_01230
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Entry
PspMM1_01230 CDS
T09926
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psmm
Pseudoalteromonas sp. MM1
Pathway
psmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PspMM1_01230 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmm03019
]
PspMM1_01230 (rhlB)
Enzymes [BR:
psmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PspMM1_01230 (rhlB)
Messenger RNA biogenesis [BR:
psmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PspMM1_01230 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BED87655
LinkDB
All DBs
Position
1:135179..136198
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AA seq
339 aa
AA seq
DB search
MAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEKGVDILIGTTGRLIDLY
KQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPDTADRLNLLFSATLSYRVQELA
FEHMTNPEHVQIEPDVKTGKRIKEELFHPSQEDKIKLLLTLIEEEWPDKAIVFANTKHSC
ETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFTKGELDFLVATDVAARGLHIPEVSHVF
NFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLHEIEEYIEHSIPLSHYDKTAL
LDDLTKPTIQRKRNYSTGPRNRSNNNGRRPNNSYQKGRS
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggccccgactcgggagcttgcgattcagatacacaaagatgctaaaattttagcgccg
cactgtaatcttaacttaggtttagtatatggtggcgaagattacgaaaaacaacgtgca
caattagaaaaaggcgttgatattttaattggtactacaggtcgactcatcgatttgtac
aagcaaggctgttacacccttaatgaaattgaggtagttgtgcttgatgaagccgatcgt
atgttcgatttaggctttataaaagatattcgttatatgttccgccgtatgccagataca
gcagatagattaaacctgttattttctgccacgctttcttatcgtgtgcaagaactagcc
tttgaacatatgactaaccctgagcacgttcaaatcgagccagacgtaaaaacaggtaag
cgaattaaagaagagctatttcatccttctcaagaagataaaattaagctgctattaact
ttaattgaggaagaatggccagataaagccattgtttttgctaatacaaagcacagctgt
gaaacagtgtatgcttggttaaaagccgatggccaccgggtaggtatgctcactggcgat
gtaaaccagaaaaaacgtcaatctatattagcgcaattcaccaaaggcgaattagacttt
ttagtggcaaccgatgtggcagcacgtgggctacatatccctgaggtaagtcatgtattt
aattttgacctgccagatgattgtgaagattacgttcaccgtattggccgtactggtcgt
gcgggcgcatcaggtcatgcaattagctttgcatgtgagcagtacgcttataacctgcat
gaaattgaagaatacatagagcacagcattcctttatcacattatgataaaaccgcattg
ctagatgatttaacaaagcctactattcaaagaaagcgcaactattctacaggcccacgt
aatcgtagtaataataacggacgtcgcccaaataatagttaccaaaaaggacggtcgtaa
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