Pseudoalteromonas sp. MM1: PspMM1_01290
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Entry
PspMM1_01290 CDS
T09926
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psmm
Pseudoalteromonas sp. MM1
Pathway
psmm03420
Nucleotide excision repair
psmm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PspMM1_01290
03430 Mismatch repair
PspMM1_01290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmm03400
]
PspMM1_01290
Enzymes [BR:
psmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PspMM1_01290
DNA repair and recombination proteins [BR:
psmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PspMM1_01290
MMR (mismatch excision repair)
Other MMR factors
PspMM1_01290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
DUF3553
SAP18
Motif
Other DBs
NCBI-ProteinID:
BED87661
LinkDB
All DBs
Position
1:complement(147648..149813)
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AA seq
721 aa
AA seq
DB search
MDVSELLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRTRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTQ
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFDAETIRLEQNYRSTATILKASNALIKNNSE
RMGKSLWTDGNEGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRAASAVTKFVELVEHIEDKISDLTLQEQAK
YTIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEEEEFSSPLQGFLAYTSLES
GEGQADEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCIEEIRIKTQVSRPPAAGRFSAS
VSHAVFEESGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgaattactcgatggcttaaatgacaaacaacgcgatgccgttgcagcc
ccactacaaaacatgctggtattagcaggtgctggttcgggtaaaacacgtgttttagtt
catcgtatcgcgtggttaatgcaggttgagcaagcctctgcttatagtatttttgcggtt
acctttactaataaagctgctaaagaaatgcgcactcgtgttgaagaaactctaaaagct
cccgtgggaggcatgtggattggtacattccatggtttatcacaccgtattttgcgcgct
catcaccgtgaagcaaacctgccagaagcctttcaaattttagactctgacgatcagcta
agaatgatcaagcgcttattaaaatcaatgaatattgatgataaaaagtggcccgccaag
caatttggctggtacatcagcgctaaaaaagatgaagccctgcgccctaaagatattcaa
gcctacgatataaatgagcaaatgatgctgcgtgtatatgccgcctatcaagaggcgtgt
gaccgtgcaggtttagttgattttgcagaaatactgttacgtagctacgaagttcttaaa
aataaccctacgctacttcgccattaccagcagcgctttgcccacatgctggtagacgag
ttccaagataccaataccattcaatacgcatggttaaagctacttgctggtgatacacaa
agcattatgattgtaggcgacgatgaccaaagtatttacggttggcgcggcgctaaaata
gaaaacattaaacgctttttaactgactttgacgccgaaactattcgtcttgagcaaaac
taccgctcaaccgcaaccattctaaaagcatctaatgcgctaattaaaaacaactcagag
cgcatgggtaaaagcttatggaccgatggtaacgaaggcgagcctatatcaatttatgcc
gcctttaacgagttagacgaagcccgctttgtaagcagtaagctacgcagctggttaaat
gccggcaatgcgttgcaagacgccgctattttataccgtagtaacgcgcaatctcgtgta
cttgaggaagcaatgctacaagaaggcttaaaataccgcatttacggtggtatgcgattc
ttcgagcgccaagaaattaaagacgcgctctcgtacttacgcttagtaggtaatcgccaa
gacgacgctgcatttgagcgtgttattaacacccctgcgcgtggtattggtgataaaaca
cttagccatatacgcgactgtgcgcgtgctgagtcgctgcctctttggtacgcagccaaa
gcaattgttgaacaacaacacttatctggccgtgcggcaagcgctgtaacaaagtttgta
gaattggtagagcacatagaagataaaattagcgaccttacactgcaagagcaagccaaa
tacactattcaaacctctggtttaatggccatgtatcaagctgaaaaaggcgaaaaaggc
cgcgctcgcgtagaaaacttagaagagcttatcagtgcctgcgatcagtacgagctcccc
gaagaagaagagtttagctcaccactgcaaggctttttagcctacacctcacttgagtca
ggcgaaggccaagccgatgagcatgaagacgcagtacaaatgatgactcttcactcagct
aagggcttagagtttccgcttgtgtttatggtgggcgttgaagaaggcatgttcccatca
cagcaaagtaatgaagaatcggggcgcttagaggaagaacgccgcctttgttatgtgggt
atgacccgtgccatggacaaactttacataagccatgccgaaagccgccgtttatacgga
caagaaaagtaccacagcccatcgcggtttttacgcgaaatacctgaagattgcatagaa
gaaattcgcattaaaacccaggtatcacgcccgcctgctgcggggcgttttagtgcctca
gtaagccatgctgtattcgaagaaagtggttttaacttaggccaacgtgtactacacgct
aaatttggtataggcaccgtgcttaattacgaaggcagcggcgcacaatcgcgtgtgcaa
gtaaactttgacgaccttggcagcaaatggttagtaaccgcatatgcacgacttcaagct
gtataa
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