Pseudoalteromonas sp. MM1: PspMM1_05330
Help
Entry
PspMM1_05330 CDS
T09926
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
psmm
Pseudoalteromonas sp. MM1
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmm03021
]
PspMM1_05330 (rapA)
Transcription machinery [BR:
psmm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PspMM1_05330 (rapA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
NAT10_TcmA_helicase
Rootletin
Motif
Other DBs
NCBI-ProteinID:
BED88065
LinkDB
All DBs
Position
1:complement(614822..617716)
Genome browser
AA seq
964 aa
AA seq
DB search
MNFSLGQRWISDTESDLGLGTVVAIEGRQVSILFPASGENRVYSTAEAPVTRVAFNPGDV
IKSVEEWELEVESIEVQGELLCYVGTRIDTGEQAKLKETFLDHFIKFNKPQDRLFAGQVD
RFDRYTLRYQTWQHQFQRQQSPIKGLIGQRANLIPHQLYIAQEVGKRFAPRVLLSDEVGL
GKTIEAGMILHQQIISGRASRVLIVVPENLQHQWLVEMLRRFNLRFSIFDEERCDEAFAD
SPNVFDTEQLVLTSLEFLTKKKRWFEQATLADWDLLVVDEAHHLSINNGKPSTEYQRMAE
LSQDIPGLILLTATPDQLGHRSHFARLQLLDPDRFYDYDVFKEEEANYKDVAEAANQLLQ
AQALDDTAKATLIELLKETDITDVLEKAQQGDLPARKEILNMLLDRHGTGRILFRNSRSG
IDGYPSRKLHAYPMALPKQYKTAMSVLGSMSGIQSAELSAQRALFPEKIFQEFEGESASW
GAFDPRVDWLINTLKTLKHEKVLLICAKAETAISLEQILREREAIKASVFHEGMSIIERD
RAAAFFADEYDNAQILLCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQTQ
DVNIHVPYFENTAQEVLLRWYNEGLDAFESTSTTGQLLYKEFSEDLLEYIAAHNCDEEEL
DPLLEQVAKQNAVLRKQMESGRDRLLELHSSGQGAADSLVEDIEALDNQFELPSYMINVF
DTFGVSQEDKGENTIILKPTEHMLSASFPSLKEDGMTVTFDRDTALSQEDVHFISWDHPM
VQGTMDMICDDDFGSASVALLKNKKLPPGTFFVELIFVAEAMAPKALQVGRFLPPTPIRI
LLDKASNNLGENVAFDSFNQQLSAVGRQTASKLAGALQGAVHPMINTAKDMAQQQLEVIR
SASLEKMQSTLGEEQARLEALKQINPNIRQEEITFFDKQRSELTTHIQKAQLKLDAIRLI
VVSH
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttccttaggtcagcgttggatcagtgatacagagtcagatttaggattaggc
accgtagttgccattgaaggccgtcaggtcagcattttatttcctgccagtggtgaaaac
cgtgtttattctacagcagaagcaccggttacccgtgtggcatttaatccaggtgatgtg
atcaaaagcgttgaagaatgggaattagaagtagagtctatcgaagtgcaaggtgaacta
ctttgctacgtaggtacacgtatcgataccggcgagcaagcaaagctaaaagaaaccttt
ctagatcattttattaagtttaataaaccgcaagatcgtttatttgcgggccaagtagat
cgtttcgatcgctacactttgcgttaccaaacatggcaacaccaattccagcgccagcaa
tcgcctattaagggtttgattggtcagcgcgctaaccttatcccgcaccagctttacatt
gcacaagaagtaggtaaacgttttgctccacgtgtactgctttcagatgaagtaggcctt
ggtaaaaccattgaagcaggtatgattttacaccaacaaataattagcggtcgtgctagc
cgtgtacttattgtggtgccagaaaacctacaacaccaatggttagtagaaatgctacgc
cgctttaatttacgtttttctatttttgatgaagagcgttgcgacgaagcctttgccgac
tcaccaaacgtgtttgataccgagcaactggtacttaccagccttgagtttttaaccaag
aaaaaacgttggtttgaacaagcaacattggctgattgggacttattagttgttgatgaa
gcgcaccacctaagtattaacaatggtaagccgagcaccgaatatcagcgtatggccgaa
cttagccaagatattccggggcttattttattaactgcaacgccagatcaacttggtcat
cgtagtcactttgcccgcttacaattgctcgacccagataggttttacgactacgacgta
ttcaaagaagaagaagctaactacaaagacgttgccgaagcggcaaatcagctgctgcaa
gcgcaagcccttgatgatacagccaaagccacactcattgagctattaaaagagaccgat
attaccgatgtgcttgaaaaagcgcagcaaggtgatttaccggcccgtaaagaaatactt
aacatgctgcttgatcgccacggcacaggccgtattttgtttagaaacagccgcagcgga
attgatggctaccctagccgtaaattacatgcttaccctatggcactgccaaagcagtac
aaaacagctatgtcggtgcttggcagcatgagcggtatacaaagtgcagagctaagtgca
caacgcgcgctattccctgaaaaaatctttcaagagtttgaaggtgaaagtgcaagctgg
ggcgcatttgacccacgtgtagattggttaatcaacacacttaaaaccctaaagcacgaa
aaagtactgcttatttgtgccaaagccgaaactgcgattagccttgaacaaattttgcgt
gagcgtgaagcaataaaagcctctgtgttccacgagggcatgtcgattattgagcgtgac
cgcgcagcagcattttttgctgatgaatacgacaacgcacaaatactgctgtgttcagag
attggttcagaaggtcgtaacttccagttttcgcatcatttagtgttatttgatctacca
ctaaaccctgacttacttgagcaacgtatcggtcgattagaccgcattggtcaaacgcaa
gatgtaaatattcatgtgccgtattttgaaaacaccgcgcaagaagtattacttcgttgg
tacaacgaaggccttgatgcgtttgagagcacatcaactaccggccaactattgtataaa
gagtttagcgaagacttacttgagtacattgctgcacataattgtgatgaagaagagctc
gacccactacttgagcaagtagccaagcaaaatgccgtgttgcgcaagcaaatggaaagt
ggccgtgaccgtctattagagctacattcatctggccaaggcgctgccgactcgctggtt
gaagatatcgaagcacttgataaccaatttgagttaccaagttatatgatcaacgtattc
gacacgtttggtgtaagccaagaagacaaaggcgaaaacaccattattttaaagccaaca
gagcatatgctaagtgcttcgttcccaagcttaaaagaagatggcatgacggttaccttt
gaccgcgatactgctctttcgcaagaagacgtgcattttattagctgggatcatcctatg
gtgcaaggcacgatggacatgatttgtgatgatgactttggtagtgcatcggttgctttg
cttaaaaacaaaaaattgccgccaggcaccttttttgttgagctgatttttgtagccgaa
gctatggcaccaaaagccctgcaagtaggacgctttttaccaccaacgcctattcgcata
ttgcttgataaagccagtaataacctaggtgaaaatgtagcgtttgatagctttaaccag
cagctttcagccgttggtcgccaaacagcaagtaaattagcaggtgctttacaaggtgcg
gttcatccaatgatcaacaccgcaaaagacatggcgcagcagcagcttgaggttatacgc
agtgcatctcttgaaaaaatgcaaagcaccctaggcgaagaacaagcccgccttgaagcg
cttaagcaaattaatcctaatattcgccaagaagaaattaccttcttcgataagcagcgc
agcgagctgacaacgcatattcaaaaagcccagttaaagcttgatgcaatacgtttaatt
gtggtttcgcactaa
DBGET
integrated database retrieval system
