Pseudoalteromonas sp. MM1: PspMM1_11610
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Entry
PspMM1_11610 CDS
T09926
Name
(GenBank) ATP-dependent helicase
KO
K19789
DNA repair protein RadD
Organism
psmm
Pseudoalteromonas sp. MM1
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmm03400
]
PspMM1_11610
DNA repair and recombination proteins [BR:
psmm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
PspMM1_11610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_22
AAA
SLFN-g3_helicase
ERCC3_RAD25_C
ATPase_2
Zn_ribbon_3
AAA_30
Zn_Ribbon_1
UPF0547
DZR
TniB
zf-tcix
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-ProteinID:
BED88693
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All DBs
Position
1:1300621..1302372
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AA seq
583 aa
AA seq
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MSYKLRPYQQEAVERTVLHFRKTNDPAVIVLPTGAGKSLVIAELARIAKQKILVLAHVKE
LVEQNAQKYKSFGLEASIFSAGLKEKSLSHQVTFASVQSLSRNLNKLNEHYSLLIIDECH
RVNGDKKSQYGKVINTLKEYNPQLKVLGLTATPYRLGMGWIYHHHYHGFVKGNKESPFKN
CIFELPLRYMIKHNYLTPPNQVDAAISHYDFSSLATNAFGQYTTDDMNALLKNSERATQA
ILKQVIQYSETRQGVMIFAATVMHAQEILTYLPAEQSALITGDTPNAERDKLINQFKQKN
IKYLVNISVLTTGFDAPHVDFIAILRPTESVSLYQQIVGRGLRLNEGKTDCLVIDYAGNG
FDLFHPEVGDKKGDSDNEPVQVLCPGCGFANIFWGKTDADGKVVEHFGRRCQGLLEDDTG
QKEQCYYRFRFKECEQCGAQNDIAARKCHDCGAVMADPDDKLRNALNLKDALVLRCSGLS
VVKLKDDLIKITYFDEDGASCDEVYNLASKGGQYIFNKQFGKRLGQGQEPVEFKSAEQVI
KAQFDLVHPDFVIARKSKKYGWKVSDKLFDYTGNFRKANQLSG
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgagctataaattaaggccgtatcaacaagaggccgtagagcgcaccgttttacatttt
cgaaaaacaaatgatcctgccgtgattgtactgcctaccggtgcgggtaaaagccttgtt
attgcagagcttgcgcgtattgctaagcaaaaaattttggtgcttgcacatgttaaagag
ctggtagaacaaaacgcacaaaaatataaaagttttggtttagaagcgagtatattttca
gcagggttaaaagaaaaatcactcagccaccaagttacttttgccagtgttcagtcttta
tcgcgtaatttaaataaattaaatgagcattattctttgcttattattgatgagtgccac
agagtaaatggggataaaaaaagccaatatggcaaggttataaatacgctcaaagagtat
aatcctcaattaaaagtattgggtttaacggctacaccctatagattaggaatggggtgg
atataccatcaccattaccatggttttgtaaaaggcaataaagaaagtccatttaaaaac
tgtatatttgaattaccgcttaggtatatgatcaaacataattacttaacgccgccaaat
caagtggacgcggcaattagtcattatgatttttcgtccttggctactaatgcgtttggg
caatatacaactgatgatatgaatgcgcttttaaaaaatagcgagcgcgcaacgcaagct
atactaaagcaggtaatacaatacagtgaaacccgccaaggcgtgatgatatttgcggca
acggttatgcacgcgcaagaaattttaacttatttacccgcagagcaaagtgcccttata
actggcgataccccaaatgcagagcgcgataaattaataaatcaatttaaacaaaaaaac
ataaaatacctcgttaatatttctgttttaactaccggatttgatgcgccgcatgtcgat
tttatcgctattttacgccccaccgaatcggttagcttataccagcaaattgttggccgt
gggcttaggctaaatgaaggaaaaacagactgcttagttatagattacgcaggcaacggc
tttgatttatttcaccctgaggtgggcgataaaaaaggggatagcgataatgagcccgtt
caagtgctttgccccgggtgtgggtttgcaaatattttttggggaaaaaccgatgctgat
ggcaaagtcgttgagcattttggcaggcgctgccaaggtttattagaagatgatacaggc
caaaaagagcaatgctattatcggtttaggtttaaagagtgcgaacaatgtggcgctcaa
aacgatatagcagctcgtaaatgccatgattgcggcgcagtaatggccgaccccgacgac
aagctacgtaacgcccttaatttaaaagatgcgttagtactgcgctgtagtgggttatca
gtggtaaaacttaaagatgatttaattaaaataacctactttgatgaagatggtgcaagt
tgcgatgaggtttataaccttgctagtaaaggcgggcagtatatttttaataaacagttt
ggtaaacgcctagggcaggggcaagagcctgtcgaatttaaaagtgctgagcaggttatt
aaggcacagtttgatttagtgcatcccgattttgttatcgcgcgtaaaagtaaaaagtat
ggctggaaggtatctgataaattatttgattacactggtaactttagaaaagctaatcag
ttaagcggttaa
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