Pseudoalteromonas sp. MM1: PspMM1_13300
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Entry
PspMM1_13300 CDS
T09926
Symbol
ams
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psmm
Pseudoalteromonas sp. MM1
Pathway
psmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PspMM1_13300 (ams)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmm03019
]
PspMM1_13300 (ams)
03009 Ribosome biogenesis [BR:
psmm03009
]
PspMM1_13300 (ams)
Enzymes [BR:
psmm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PspMM1_13300 (ams)
Messenger RNA biogenesis [BR:
psmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PspMM1_13300 (ams)
Ribosome biogenesis [BR:
psmm03009
]
Prokaryotic type
rRNA processing factors
PspMM1_13300 (ams)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BED88862
LinkDB
All DBs
Position
1:complement(1500468..1503872)
Genome browser
AA seq
1134 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIARTYFPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTDLKEALSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWDAIQQAADSAKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEA
KAHIERFRPDFMSRVKLYQGDTPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAARPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTAQVNAQVPVAVAAYLLNEQRRSVHRIEKHHKCDVVIIPNQHMETP
HYEVMRLRKDETLETVSYDQVVAPEPESFEMAKPAAAPVREEPMLKGVVMPSTPAPQAKV
DKPAAPVAVPKVEGGLLAAIGNWFKSLFAGESEEEKQAKEKAEQEKQQQTRNNNRRGNSD
NRRRNNNQRRRNNSRSKPRGERPSEEEVKTDSTANESQEKNENRNKRRRNPNSRKRNDNR
NNDNRNADKEQVKTDAKANETEAKQSTEPKEQKPKVRRQRRNVRKKVRIQDENTEQVKAS
DTPEQAQQSTETAKVEQPKAQEQAPTAKQVTNEQKSEQTKPEPVKEQAPKTQAEQEEKPA
AAASTDQANSEDEQGQTRTRSRRSPRHLRASGQRRRRPEQGEATEEKSDEAPVFVPVADQ
AAAEYEAELKAKAEQPTSNDASENVEQALAVEDLAKVEAAPKAEQTTANDDAVQTVDPET
AEEPVVVTEQPISAPEPVKSEAAVAEQPATPEPVKAEPEVAEQPVAPESVKAEPEVAEQP
AIPEPVKAEPEVAEQPVAPEPVEAEPEVAEQPATPEPVKAEAEVTEQPVAQEPVKAEAEV
TEQPVAQEPVKAEAEVTEQPVAQEPVKAEPEVAEQVETESAPAKDANAKTVITKGAASAP
MAQPTPVADSDVKHTSVAMAHDKRELVPDSGLRAGSIKPAGRASSAMTKTMSAE
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcgacgcagcaagaagaaatgcgcgtagcactggttgac
ggccagcgcctatatgatttagatatagaaagcccaggtcacgaacagaaaaaagccaat
atttacaaaggcaaaatcacacgcattgaaccctctttagaagcggcatttgtagattac
ggcgccgatcgccatggtttccttcctttaaaagaaattgcccgtacttacttcccacaa
ggttacacttttcatggtcgccctaacattcgcgacgtgattaaagaaggtcaagaagta
attgtacaagtagataaagaagagcgcggccaaaaaggcgcagcccttactacttttatc
agcgtagcgggtagttacttagtgcttatgccaaataaccctcgtgcaggcggcatttct
cgtcgtattgagggtgatgagcgtaccgaccttaaagaggcgttaagccgcttagagtta
cctaaaggcatggggctaattgtacgtaccgcaggtgttggcaaatcatttgaagaatta
aattacgatttaaaagcgcttttagttcattgggatgcaattcaacaagcagccgacagt
gctaaagcaccgtttttgattcaccaagaaagcaacgtaattttccgcgcaattcgcgat
tatttacgtcgtgacattggcgaaatcttaattgataaaccccgtgtatttgaagaagct
aaagcgcacattgagcgttttcgccctgactttatgagccgtgtaaagttgtatcaaggc
gacacgccattgtttacgcattaccaaattgaaagccaaattgagtctgcgttccaacgt
gaagtgcgtttgccttcaggtggttcaattgtaattgacccaacagaagcgcttacctct
attgatatcaactcgtctaaagcaactaaaggcggtgatattgaagaaacagcactaaat
actaacttagaagcggctgatgaaattgcccgtcaattacgtcttcgtgacttaggtggc
ttaatagttatcgactttatcgatatgacaccgccgcgccatcaacgtgaagtagaaaac
cgcttaaaagatgcggctcgcccagatcgtgcgcgcgtacaaattggtaaaatttcacgc
tttggtttacttgaaatgtcgcgccaacgtttgcgcccatcactaggtgaagcaagtcaa
ggcccatgcccacgttgtagcggtcagggaactattcgttctaacgaatcaatcgccctt
tctattctgcgtttaattgaagaagaagcaattaaagacaacactgcacaagtcaatgcc
caagtgccagttgctgttgctgcttatttgttaaacgagcagcgcagaagtgttcatcgt
attgaaaagcatcacaaatgtgatgttgtgattattcctaatcagcacatggaaacacct
cactacgaagtaatgcgtttacgtaaagacgaaacactggaaacagtaagttacgatcaa
gtagttgcacctgagccagagtcgttcgaaatggctaaaccagcagctgcgcctgtacgt
gaagagccgatgcttaaaggtgttgttatgccttcaacgccagcgccacaagctaaagta
gacaaaccagcagcgccagtagctgtacctaaggttgaaggtggcctattggctgctatt
ggtaattggtttaagtctttatttgctggtgaaagcgaagaagaaaagcaagcaaaagaa
aaagctgagcaagaaaagcaacaacaaacgcgtaataacaatcgccgtggtaacagtgac
aatcgccgccgtaataacaaccaacgtcgccgtaataactcacgctcaaaacctcgtggt
gaacgccctagtgaagaagaagtgaaaactgattctaccgcgaacgaaagccaagagaaa
aacgagaaccgcaacaagcgtcgtcgtaatcctaactcgcgtaagcgcaacgataaccgt
aataacgacaatcgtaatgcagacaaagagcaagttaaaacagacgctaaagcgaatgaa
actgaggcaaaacaaagtactgagcctaaagagcaaaaaccaaaggttcgccgtcaacgt
cgtaatgttcgtaaaaaagtacgtattcaagatgaaaatactgagcaagtaaaagcatct
gatacgcctgagcaagcgcagcaaagcactgaaacagcaaaagtagagcaacctaaagcg
caagaacaagcgcctacggcaaagcaagttacaaatgagcaaaagtcagagcaaacaaaa
cctgaaccggtaaaagagcaagcaccaaagacacaagctgagcaagaagaaaagccggca
gctgcagcgtcaaccgaccaagcaaactctgaagatgagcaaggacaaacacgcacgcgt
tcgcgccgttctcctcgccaccttcgcgcttcgggtcagcgtcgtcgtcgccctgagcaa
ggtgaagctacagaagaaaagtcagatgaagcacctgtatttgtaccagtagctgaccaa
gctgcggcagagtacgaggccgagctaaaagcaaaagctgaacagccaacctcaaacgat
gcttcagaaaatgttgagcaagcgttagctgtagaagacttagctaaagttgaagctgct
cctaaagcagagcaaacaacagcaaatgacgatgcagtgcaaactgttgacccagaaaca
gcggaagagccagttgttgttactgaacaacctatttcagcgcctgaacctgttaaatca
gaagcagcagtagctgagcaaccagcaactccagagcctgtaaaagcagaacctgaagta
gccgagcaaccagtagctcctgagtctgtaaaagcagaaccggaagtagctgagcaacca
gcaattccagagcctgtaaaagcagaacctgaagtagctgagcaaccagtagctccagag
cctgtggaagcagaacctgaagtagctgagcaaccagcaactccagagcctgtaaaagca
gaagctgaagtaactgagcaaccagtagctcaagagcctgtaaaagcagaagctgaagta
actgagcaaccagtagctcaagagcctgtaaaagcagaagctgaagtaactgagcaacca
gtagctcaagagcctgtaaaagcagaacctgaagtagctgagcaagttgagactgaaagt
gcacctgcaaaagatgccaatgcaaaaacggttatcaccaaaggcgcggcaagtgcacca
atggcacaaccgactccagttgctgatagcgacgtaaagcatacatcagttgctatggca
cacgataagcgtgagctagtgcctgatagtggcttacgtgcgggttcaattaaaccagct
ggtcgtgcgagttctgcaatgactaaaacaatgagcgctgagtaa
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