Pseudoalteromonas sp. MM1: PspMM1_19420
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Entry
PspMM1_19420 CDS
T09926
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psmm
Pseudoalteromonas sp. MM1
Pathway
psmm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PspMM1_19420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmm03400
]
PspMM1_19420
Enzymes [BR:
psmm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PspMM1_19420
DNA repair and recombination proteins [BR:
psmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PspMM1_19420
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PspMM1_19420
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PspMM1_19420
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Plexin_cytopl
Motif
Other DBs
NCBI-ProteinID:
BED89474
LinkDB
All DBs
Position
1:2181492..2182937
Genome browser
AA seq
481 aa
AA seq
DB search
MAYQEQNQATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPH
PEACLITGITPQVAMKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNF
YDPYEREYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAA
HDALSDVTATIALAKLIKEKQPKLYNFFFGLRNKKALGDLVDVFNMTPLVHTSSRIPATQ
GCTTWVAPMSFHPVNKNAVICFDLTQNPQVLLDLNVEELRKRLYTKRVDLAEGDLPVGLK
LVHLNKCPILAPAKTLLPENAARLGIDREQCLANLAILKANTELRDKVTEVFNEKGDYSA
TTNVDYLLYDGFTSHADKAKFAIIRDAKPEELAGLNLDFEDKKFNTLLFRYRARNWPETL
NQQELDQWRQYCQNKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQS
M
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcatatcaagagcaaaatcaagcaacaatttattggcacgattatgagacctggggg
gcgagccctcaaaaagataagccgagtcagtttgccggtgtgcgcaccgatcttgattta
aatataattggcgagccgcttattgaatattgtaagccgcaagcggattacttaccgcac
cctgaggcatgtttaattaccggtatcacaccacaagtggcgatgaaaaaaggcttggtt
gaagctgagtttattgcaaaaattcatgccgaatttagtgcgccaaacacctgtgtggct
ggttataacagtattcgctttgatgacgaagtaagccgttatagcttttatcgcaacttt
tacgatccgtacgagcgtgagtataaaaacaataacagccgctgggatattattgattta
gtacgtgcatgttatgcgctgcgccctgaaggtattgaatggccgttaaaagaagacggc
agcccgagctttaagcttgagcatttaacggtagctaatggcattgaacacgccgctgcg
cacgatgcgctaagcgatgtaactgccactattgcactggctaaacttataaaagaaaaa
caaccaaagctttataacttcttttttgggctgcggaataaaaaagcccttggcgattta
gttgatgtatttaacatgacgccgctggtacacacatcatcgcgtattcctgcaacgcaa
ggttgtactacgtgggtagcacctatgagctttcacccggtaaataaaaacgccgttata
tgttttgatttaacccaaaacccgcaagtattgcttgatttaaatgtagaagagttgcgt
aagcgtttatacaccaaacgcgttgatttagccgagggtgacttacccgttggtttaaaa
ttggtgcatttaaacaagtgccctattttagcgcctgctaaaacgttattgcctgaaaac
gcagcccgtttaggcattgaccgtgagcagtgcctcgctaatttagctattttaaaagcc
aataccgagcttcgcgataaagtaactgaagtgtttaacgaaaaaggcgattacagcgcg
accactaatgttgattacttactttacgatggctttacaagccatgccgacaaagctaaa
tttgcgattattcgcgatgctaaaccagaggaactcgctggcttaaatttagattttgaa
gataaaaagttcaatacattactgtttagataccgtgcacgaaactggcctgaaacgcta
aaccagcaagagcttgaccaatggcgtcagtattgccaaaacaagctaatgcacggggaa
gatcaaccctcaataagtgcacaagattttatgatcactcttgaaaacttggcgcatgag
cacgacgacagcgaaaagaacctgaccattttaaaggcactatataactacgcacagagc
atgtaa
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