Pseudoalteromonas sp. MM1: PspMM1_20600
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Entry
PspMM1_20600 CDS
T09926
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psmm
Pseudoalteromonas sp. MM1
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psmm03019
]
PspMM1_20600 (hrpA)
Enzymes [BR:
psmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PspMM1_20600 (hrpA)
Messenger RNA biogenesis [BR:
psmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PspMM1_20600 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
ResIII
AAA_25
NTPase_1
Cas3-like_C_2
NACHT
SLFN-g3_helicase
nSTAND_NTPase5
T2SSE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BED89592
LinkDB
All DBs
Position
1:complement(2319393..2323280)
Genome browser
AA seq
1295 aa
AA seq
DB search
MVNLGQLFGELKTCLKKDQFIFKKRLHGVKKIHDESKQANALEKIAADITRSQQLRVKRL
AELPSVTYPEQLPVSQKKDVIKDAIANNQVVIIAGETGSGKTTQIPKMCLELGRGVDGFI
GHTQPRRLAARSVANRIAEEMKCELGQQIGFKIRFSDQVSNNTYVKLMTDGILLAEIQQD
RFLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKVIITSATIDPERFSKHFDDAP
IIEVSGRTFPVEVRYNPISDINKDAMEAEGDQLQGIFDAVDELCAEGPGDILIFLNGERE
IRDTAEALSKRNLKHTDVLPLYSRLSNAEQNRIFAPHSRRHIILSTNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRMGRCGRVEAGICIRLYSEDDFIFRPE
FTDPEILRTNLASVILQMLALGLGDMSEFPFVQAPDSRNINDGLTLLEELQAIKPSKKRH
QTSLTQSGRELSRLPVDPRLAKMVLSANKLGALREVIIIVAALSIQDPRERPQEKRAAAN
EKHSRFDDPDSDFIAFLNLWNYLEEQQSELTNSQFRKLCQKDFLAYMRIREWQDIVYQIS
TVCNEMKIKATTQVADSELIHKALLSGMLSHIGFKDEKQIYKGARNSQFHIFPGSGLFKK
SPKWIMSAELVETSKLYARINAKIDINWVEPFAQHLVKRSYSEPHWEKKPGAVIAFEQQT
LYGLLVVNKRRCVYSNIDPKVSRELFVRTALVEQELGLNEQFLAYNRELIEDIQVLEHKS
RRRDILVDEQTLFEFYDKKIPKEINNRAAFIKWYKAQKQQDKRYLYMTREELMQHGASNI
TEFDYPDTWQQDNIILPLSYHFDPGQAVDGVAVQIPVALLNQVQETGFDWHIPAFRHELI
SGLIKSLPKSLRRNFVPAPNYADAVLAAIEPMQGSLLDALTTRLLRMTGVKVDLEAWDLN
ALAPHLRLQFEVRDEHDKLLARGLDLAKLKAQLQGKVTDTLSKVADKGIEKADLTQWDFG
ALPASYVKKQGQYEIKAYPALVDKKATAAIELFDSEEKAQQAHQQGLRRLVLLNVPSPIK
YLQQNLPNKAKLGLYFNPFGKIADLIDDCIAAGVDSLLIKHGDIRDEAAFNKVKEQIRGE
LGDAVVEIATQVEQVLSIAHALHKKMKGRVDLTMITAHGDIKSQLESLIFKGFVSAHGAN
KMPDLIRYLKAIQKRLEKLPVDPNRDRLCVLELEKVAQEYKKLVNKIPKGLPIPQQVNAI
FWMQQELRVSLFAQTLGTPYPISAKRVMNAIKEIE
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaacctaggtcagttgtttggcgagcttaaaacgtgcttaaaaaaagatcagttt
atatttaaaaaacgcttacatggcgtaaaaaaaatacacgatgagtctaagcaggccaat
gcccttgaaaaaatagcagctgatatcacccgcagccagcagctacgtgtaaaacgttta
gcagagctgccctctgtaacgtaccctgagcaattaccggtaagtcaaaaaaaggacgtt
attaaagacgcgattgcgaataatcaagtggtgattattgctggcgaaaccggttcaggt
aaaacaacgcaaatacctaaaatgtgtttagagcttggccgtggggttgatggctttatt
ggccatactcagccaagacgtttagctgcgagaagtgtagctaaccgcattgctgaggaa
atgaaatgtgagcttggccaacagatcggttttaaaatacgttttagcgatcaggtgtct
aataatacttacgtaaaactgatgaccgacggtattttgcttgccgaaatacaacaagac
cgttttttaaaccagtacgacaccatcattattgatgaagcccatgagcgcagcttaaat
atcgattttattttaggatatttaaaaaacttactgccaaagcgtcccgacttaaaagtt
attattacctcggccaccattgaccctgagcgcttttcaaagcactttgatgatgcgccc
attattgaagtatcgggacgtacattccccgttgaggtgcgctataaccctataagcgat
ataaataaagacgctatggaagccgaaggcgaccaattacaaggtatttttgatgcggta
gatgagttgtgcgctgaagggccaggggatattctcatatttttaaatggcgagcgtgaa
atacgcgataccgcagaggcgctctcaaaacgtaatttaaaacacaccgacgtattacca
ctttattctcgcttatctaacgcagaacaaaaccgtatatttgccccgcattcgcgccgc
catattattttatctacaaacgtggccgaaacttcattaacggtgcccggtattcgttat
gtaatagacccaggtacagcgcgtattagccgttacagctatcgtactaaagtgcagcgc
ttacctattgagccaatttctcaggcaagtgcgaaccagcgtatgggacgctgtggccgt
gttgaagcaggtatttgtattcgtttgtactcagaagatgactttatatttcgtcctgag
tttacagacccagaaatactgcgcactaatttagcctcagttattttgcagatgttggca
ttagggcttggcgatatgagcgagtttccgtttgtacaagcgccagatagtcgcaatatt
aacgatggtttaaccttacttgaagagcttcaggcgattaagccaagtaaaaagcgccat
caaacgagtttaacgcaatcagggcgtgagcttagccgcttaccagtagacccgcgttta
gctaaaatggtgcttagcgctaataagctcggtgcgcttcgagaagttattattattgtg
gctgcgctgtcgattcaagacccacgcgagcgcccgcaagaaaaacgcgccgcagcgaac
gaaaaacatagtcgctttgatgatcctgactcggattttattgcttttttaaacctttgg
aattacctagaagagcagcaaagtgagctgactaatagccagtttagaaagttgtgccaa
aaagactttttagcttacatgcgtattcgcgagtggcaagacattgtttatcaaataagc
actgtgtgcaacgaaatgaaaattaaagccaccacgcaagtggctgactctgagctaatt
cacaaagcgctactgagcggtatgttaagccacataggctttaaagacgaaaagcaaata
tataaaggcgctcgtaatagccagtttcatatctttccgggttctgggttatttaaaaag
agccccaaatggattatgtcggcagagctggtagagaccagtaagttatacgcacgtatt
aacgccaaaatagatattaattgggtagagccctttgcacagcatttagtaaaacgaagc
tactctgagccgcattgggagaaaaagccaggcgctgttatcgcgttcgagcagcaaacc
ttgtatggcttattggtggttaataaacgccgctgtgtgtatagcaatatagaccctaaa
gttagccgcgagctatttgtacgtaccgcccttgtagagcaagagcttggcttaaatgag
cagtttttagcatacaaccgcgagctaatagaagatattcaggtgcttgagcataaatcg
cgacgtcgcgatattttggttgatgagcaaacgttatttgaattttacgataaaaaaata
cctaaggaaatcaacaaccgtgcagcttttataaagtggtataaggctcaaaagcaacaa
gacaaacgctacctatacatgacccgtgaagagcttatgcagcacggcgcaagtaatatt
actgagtttgattacccagatacatggcagcaagataatatcattttgccgctgagctat
cattttgatccagggcaagccgttgatggggtggctgtacaaataccggtagcactttta
aaccaagtgcaagaaaccgggtttgattggcacataccggcctttaggcatgagctaata
agtggtttaattaaatcgttacctaagtcgttacgtcgtaactttgtacctgctcccaat
tacgctgacgctgtactggctgccattgagcctatgcaaggcagcttacttgatgcactt
actacacgcttactaagaatgacaggtgtaaaagtagatttagaagcgtgggatttaaac
gcactggcgcctcatttaaggttgcagtttgaggttcgtgacgagcacgataaattgctt
gcacgcggcctagatttggcaaaactaaaagcacagctgcaaggtaaagtaaccgatacg
ctttccaaggtggctgataaaggcattgaaaaagcagatttaacgcaatgggactttggt
gctttgcctgcctcgtatgttaaaaagcaaggccaatacgaaataaaagcttacccagcg
ctggtagataaaaaagccacagcggcgattgagctgtttgatagtgaagaaaaagcgcag
caagcgcatcagcaaggtttacgtcgtttagtattattaaatgtaccgtcgccgataaag
taccttcagcaaaacttgcctaataaagccaaactgggcttgtactttaatccgtttggt
aaaattgcagatttaattgacgattgtattgcagctggcgtagacagcttattaataaaa
catggcgatattcgtgatgaagcggcctttaataaagttaaagagcaaattaggggcgaa
ctaggcgatgcagtggtcgaaattgccacacaggttgagcaagttttaagcattgcccac
gcgttacataaaaaaatgaaagggcgtgtcgatttaactatgataactgcccatggcgat
ataaaatcgcagcttgagtcacttatctttaaagggtttgtgagcgctcacggtgcgaat
aagatgcccgaccttattcgttatttaaaagcgattcaaaaacgtttagaaaaactgcct
gttgatcctaaccgcgatagattgtgcgttttagagcttgaaaaagtagcgcaagagtac
aaaaagctcgtaaataaaattccaaaaggcttgcctattccacaacaggtaaatgctatt
ttttggatgcagcaggagcttagggtgtcactgtttgcgcaaaccttaggtaccccatat
cctatttctgcaaaacgcgtgatgaatgcgataaaagagatagaataa
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