Pseudoalteromonas sp. MM1: PspMM1_21870
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Entry
PspMM1_21870 CDS
T09926
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psmm
Pseudoalteromonas sp. MM1
Pathway
psmm03030
DNA replication
psmm03430
Mismatch repair
psmm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PspMM1_21870 (dnaE)
03430 Mismatch repair
PspMM1_21870 (dnaE)
03440 Homologous recombination
PspMM1_21870 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psmm03032
]
PspMM1_21870 (dnaE)
03400 DNA repair and recombination proteins [BR:
psmm03400
]
PspMM1_21870 (dnaE)
Enzymes [BR:
psmm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PspMM1_21870 (dnaE)
DNA replication proteins [BR:
psmm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PspMM1_21870 (dnaE)
DNA repair and recombination proteins [BR:
psmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PspMM1_21870 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HHH_3
Ribonuc_L-PSP
Motif
Other DBs
NCBI-ProteinID:
BED89719
LinkDB
All DBs
Position
1:complement(2473540..2477031)
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAPNFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGATHSA
GIKPIVGADFWLRSPEFPDEPCRITLLAKDNDGYKNITLLISQAYQRGHIFHRPVIDREW
LVKHREGLIILSGAKDGDLGKALLKNNPGVIESVVSFYKQHFSDHYYLELVRTNRPLEED
YLHMAVELAHKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDKRRPKRFSQEQYL
KTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGTYFLPDYPTGSLKIEDFLVKVSQDGL
EERLQFLFPDEQERQEKRGEYDDRLKVELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPGDPGMTLAKAFEVEPR
LQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNERMKREGKDPVDINTIPLDDKKSIELL
LRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKLGREE
ISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEEGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHHPA
EFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFKFTVNLKGEIVYGIGAIKG
VGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKLIYAGALDQLGPEKTQAGR
ATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQAFIKATPLTDNQWLDGEKD
TLGLYLTGHPINQYRRELRHYTSGKLVDLQPTNRDVLSTAAGLVISARTLINKKGNRWGL
ITLDDKSARIDVRLFPEQFEMYQEMLQVNNILVISGQVSFDNFSGGITMTAREINTIAQA
REKRLKAIKMTLNMVQIEAGFFDKLQKVLEPYKMGTCPIKVYYQRPDALAQLTLGIEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggccgctccaaattttgtacatttacgggttcactcagacttttcaatggtcgacggc
ctagccaaaaccaagccaattgttgctaaagcgcaagagcttgaaatgccagcgctggca
attaccgatcaaatgaacttttgtggtttagtacggttttatggtgccacgcacagtgca
gggattaaaccgattgttggtgctgatttttggctacgcagtccagaatttccagacgag
ccttgccgcattacgttgctagctaaagacaacgacggttataaaaatatcaccttattg
atctcacaagcgtatcagcgtgggcatatatttcatcgccccgtgattgaccgagaatgg
ctggtaaagcacagagaagggcttattattctctcaggtgctaaagatggtgacttaggt
aaagccttattaaaaaataacccaggcgttattgaatctgtagtgagcttttataagcag
cattttagcgatcattactatttagagctcgttcgtaccaaccgcccactagaagaagac
tacctgcatatggcggtagagctggcacataaagagcagctgccggttgttgccaccaac
gaagtggtttttttaaagcccgaaaactttgaagcacatgaaattcgcgtggctattttt
gatggctatacccttgatgataaacgccgccctaagcgattttcacaagagcaataccta
aaaacgcctgagcaaatggcggagctatttagcgacattcctgaagcactgcaaaatacg
gtagaaatagccaaacgctgtaatgtaacagttcaactaggcacatactttttgcctgat
taccccacaggctcgttaaaaattgaagactttttggttaaggtttcacaagacggcctt
gaagagcgactacaatttttattccccgatgaacaagagcgacaagaaaaacggggcgaa
tacgacgatcgcttaaaagtagagctagatgtaattaaccaaatgggtttccctggctac
ttcttaatcgtaatggagtttattcagtggagtaaagataacaatattccagtagggcca
ggacgtggttcgggtgcgggttcattagtggcttacgcgcttaaaataaccgacttagat
ccgctggaatttgacttactctttgagcgatttctaaacccagaacgtgtatcaatgccc
gatttcgatgtcgacttttgtatggacaggcgcgatgaggtaattgaccacgtatcggca
ttgtatgggcgggacgcggtatcacaaattattacctttggtactatggcggcaaaagcg
gtaattcgtgatgtaggccgtgtactaggccatccttatgggtttgttgatcgtatctct
aaattgatcccaggggatccggggatgacgcttgccaaagcgtttgaggtagagccgcgt
ttacaagaagcctacgatggcgactcagaagtaaaagatttaatcgacatgtgtcgcatc
cttgaagggtgtacgcgtaatgccggtaaacacgccggtggtgttgtaatatcgccgact
actattaccgactttgctgcactttattgtgatgacgaaggtaagtttccggttacccag
tttgataaaaacgacgtagaaacagcagggctggtaaagttcgatttcttgggcttacgt
acactgaccattttgcagtgggcggtagatatgaccaacgagcgaatgaagcgcgaaggt
aaagaccccgttgatataaacaccattccactggatgacaaaaaaagtatagagctattg
ctgcgcgccgaaacaaccgcggtattccagctagaatcgcgtggcatgaaagacctcgta
cgccgattaaagcccgattgctttgaagatatgattgcacttgtagccttgttccgcccg
ggcccgctgcaatcaggcatggtagataacttcatcgaccgtaagcttggccgagaagaa
atttcttaccccgatgcccaatatcaacacgaaagcttaaagcccatacttgagcctact
tacggcattattttgtaccaagaacaagtaatgcaaattgcccaagtactcgccggttat
acgctgggtggcgccgacatgcttcgtcgtgcaatgggtaagaaaaaacccgaagaaatg
gctaagcagcgttcaacctttgaagaaggtgcacgtaataatggtatagacggcgaacta
gcgattaaaattttcgacctggtagaaaaattcgccggttatggttttaataaatctcac
tcggcagcgtatgcactggtatcgtaccaaacgctttggatgaaaacgcaccatccggca
gaatttatggccgcggtaatgtcggccgatatggataacaccgataaaatagtgatcttg
gtggatgaatgtgaaaacatgaagctcaccttattaccgccagatgtaaacgccggtgag
tttaagtttacggtaaacctaaaaggtgaaattgtttacggcatcggtgcaattaaaggc
gtaggtgaagcgccggtagaggccattttagaagcgcgcgcaaaaggcggcccatttaaa
gatttatttgatttttgtgctcgtgtagatttaaaacgcttaaataaacgcgtgaccgaa
aaattaatttacgccggtgcgcttgaccaactagggccagaaaaaacccaagcagggcgt
gcaactttactggcaagtttaaaagatgccatgcgcgcagccgatcagcacaataaggct
gagcagcttgggcaaagcgatttatttggtttactggccaccgagcctgatgaagttgaa
caagcatttattaaagcaacaccgcttaccgataaccaatggcttgatggcgaaaaagac
accctaggcctttatttaacagggcatccgatcaatcaatatcggcgcgagcttagacat
tacaccagcggtaagttggtggatttacagccaacaaatcgtgatgtactctctacggcg
gctgggttagttatttctgcgcgaaccttaattaataaaaaaggaaatcgttggggctta
ataactttagatgacaagagcgcccgtattgatgtacgcttgtttccagaacagttcgaa
atgtaccaagaaatgcttcaagtaaacaatatcttggtaatatctggacaggtcagcttt
gataacttctccggtggcattacaatgaccgccagagaaataaacaccattgctcaagcg
cgtgaaaaacgccttaaagcgattaaaatgacgctgaacatggtgcaaatcgaggcaggt
ttcttcgataaattacaaaaagtactcgaaccttataaaatgggaacgtgtccgatcaag
gtttattaccagcgccccgatgcgttggctcaattaaccctagggatcgaatggtgtgtt
acgccgagcgacgacttaattcataagttatcacttatggcggcacaagatgtagaacta
gaatttaactga
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