Pseudoalteromonas sp. MM1: PspMM1_24040
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Entry
PspMM1_24040 CDS
T09926
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psmm
Pseudoalteromonas sp. MM1
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psmm03009
]
PspMM1_24040 (rlmD)
Enzymes [BR:
psmm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PspMM1_24040 (rlmD)
Ribosome biogenesis [BR:
psmm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PspMM1_24040 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
TRAM
MTS
Methyltransf_25
PCMT
Methyltransf_15
DOT1
Methyltransf_11
PrmA
FtsJ
Cons_hypoth95
Methyltransf_23
RrnaAD
Methyltransf_4
TPMT
Thioredoxin_13
Motif
Other DBs
NCBI-ProteinID:
BED89936
LinkDB
All DBs
Position
1:complement(2734576..2735901)
Genome browser
AA seq
441 aa
AA seq
DB search
MAQIFKAKKKPLKQQTLTLNITAMDHQGRGVAKHNNKVCFVSGALTNEKVTASLIEDKAK
YSSAKLVKVINASDSRTQPFCQHYNHCGGCQLQHLDINQQVVEKQTAVTQLFKKFAKLSD
LNWQAPLLSKPIHYRRSARIAVMYDKAAKKMRVGYRAPSSKNVISIEQCDVLSEAFTNVF
SIFETLINQYKALHSISHLQLCQNEAGNFIVIRHTKAIADEAKSYVQEAANLQQWLITWQ
DNSDVIEQTHLPTPYYFLEKFNLKFEFGLGNFIQVNDEVNQAMLAQSVNWLNLQGNEQVL
DLFCGIGNFSLVLAQHAKSVIGVEGVTSAVAMATQNAHTNSITNAHFHCFDLTQKIESAQ
WFNKSLEVLVLDPSRTGAMAVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFEVTKI
GLMNMFPHTGHIETMALFQRR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaatttttaaagcaaagaaaaaaccacttaaacagcaaacactcacgctaaat
attacggccatggatcatcaagggcggggcgttgctaaacacaacaataaagtgtgcttt
gtaagcggcgctttaacgaatgagaaagtaacggcaagcctaatagaagataaagccaaa
tacagcagtgcaaaactggttaaggttattaatgcaagtgattcgcgcacgcagcctttt
tgtcagcattataaccattgtggtggttgtcagttacagcacctagatataaatcagcaa
gtggttgaaaagcagactgcagtgacgcaattatttaaaaagtttgccaaattaagcgac
ttaaattggcaagcgcctttgctaagtaagcccattcattacaggcgtagcgcccgaatt
gccgtaatgtatgataaagccgctaaaaaaatgcgagttgggtatcgtgcgcctagctct
aaaaatgtgattagtattgagcaatgtgatgtgcttagtgaggcatttactaacgtattt
agtatttttgaaacgcttattaatcaatataaagcgctgcacagtataagtcatttacag
ttatgtcaaaacgaagctgggaactttattgttattcgccatactaaagcgatagcagat
gaagccaaaagctatgtacaagaggcggcaaatttacagcagtggttaattacttggcaa
gacaacagcgatgttatagagcaaactcacttacctacgccttattattttttagaaaag
tttaatttaaagttcgaatttggccttggtaattttattcaagtaaatgatgaagttaac
caagctatgttagcgcagtctgtaaattggcttaacttgcaaggaaacgagcaggtattg
gatttattttgtggtattggtaacttttcattagtgcttgctcagcatgctaaatcggtt
attggcgtagaaggggttacatcggcggttgcaatggcgacgcaaaatgcgcacactaac
tctattactaatgcacactttcattgttttgatttaacgcaaaaaattgaatcagcgcaa
tggtttaataagtcgctagaggtattagtattagacccttctcgtaccggtgctatggct
gttttagagcaacttcctttaaagcagtttaaaaccattttatacgtttcttgcgatcct
gttactttagcccgtgacagtgcaattatttcgcaagcaggttttgaagttactaaaatt
gggctaatgaatatgtttccgcatacaggacacatagaaacaatggcgttatttcaacgg
aggtaa
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