Pseudoalteromonas sp. MM1: PspMM1_39180
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Entry
PspMM1_39180 CDS
T09926
Symbol
sbcD
Name
(GenBank) nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
psmm
Pseudoalteromonas sp. MM1
Brite
KEGG Orthology (KO) [BR:
psmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psmm03400
]
PspMM1_39180 (sbcD)
DNA repair and recombination proteins [BR:
psmm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PspMM1_39180 (sbcD)
Archaeal homologous recombinant proteins
PspMM1_39180 (sbcD)
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Gene cluster
GFIT
Motif
Pfam:
Metallophos
Metallophos_2
SbcD_C
Fer4_12
Motif
Other DBs
NCBI-ProteinID:
BED91450
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Position
2:complement(742228..743475)
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AA seq
415 aa
AA seq
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MKVLHTSDWHLGQQFYEHDRRDEHAAFFTWLLSTLVEQHIDILLVSGDIYHTATPSASAE
NQLYQFIKDAKKRCPQLHVVIIAGNHDSANRILAAQPLLAQFDTHVVGRFEVTDPANTVI
EINTQNKRAVVVAMPFLRTSDISSLSHTKNGPSYAQGVEKAYKLALDHAYSINAQNSPLI
VMGHLHAKGGDISSDSERNLVIGGEESISASVFGNKADYVALGHLHKAQQVAKKDVIRYS
GTPIPMSFSERKYTHQVNVVKFKGDEKQTISTSVNPLYIPRSAEVIILPKGECVPLSDLC
EQIKALDISQHTIAPYLRVKLKSSDTDTTFREQIEQALEGKNVKFCGIERVREQITTNDN
SAVFEDLSEIEMLNPLNLLEQAFANDKDMAGQAVPDELKTLLNDVISELTEQEQL
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttctccacacctcagattggcacctaggccaacaattttatgaacatgaccgt
cgtgatgagcacgccgcgtttttcacttggctacttagcacccttgtagagcaacacata
gatatacttttagtttcaggcgatatttatcatacagccacaccgagtgccagcgccgaa
aaccagctttaccaatttataaaagacgctaaaaagcgttgcccgcaattacatgttgtt
attattgccggcaaccacgactcagcaaatcgtatattagcggcgcaaccattacttgct
cagtttgacacccatgtagtggggcgctttgaagtaacggacccagccaataccgtgatt
gaaataaatacgcaaaataaacgcgctgtagtcgtcgctatgccctttttacgtaccagc
gatataagttcactcagtcacactaaaaacggccctagttacgcacaaggcgttgaaaaa
gcctataagcttgcccttgatcacgcttatagcattaacgcgcaaaattcgccgttaatt
gtaatggggcacttacatgccaaaggcggtgatatttcaagtgactcagaacgtaattta
gtgattggtggggaggagtctatttcggccagtgtatttggtaacaaggcagactacgta
gcactggggcatttacacaaagcgcagcaagtcgctaaaaaagacgttattcgttacagc
ggtacgcctattcctatgtcgttttcagagcgtaagtacacacaccaagttaatgtagta
aaatttaaaggtgatgaaaaacaaactattagcacatctgtaaaccccctttacattcca
cgctctgctgaagtaattattttaccaaaaggggagtgcgtgccattaagcgacttatgc
gagcaaattaaagcgctcgatatatcacaacatactattgccccttatttacgcgtaaaa
ctaaaatcaagtgataccgataccacctttagagaacaaatagagcaagcacttgaaggt
aaaaacgtaaaattttgcggcattgaacgggtacgagagcaaattacaacaaacgataac
agcgccgtatttgaagatttaagcgaaattgaaatgctcaacccattaaacttattagaa
caagcctttgcaaacgacaaagatatggccggccaagctgtaccagatgagctaaaaaca
ctgttaaacgatgtaataagtgagctgacggagcaagagcaactatga
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