Pseudomonas sp. MPC6: ELQ88_33755
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Entry
ELQ88_33755 CDS
T12048
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psmp Pseudomonas sp. MPC6
Pathway
psmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ELQ88_33755 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmp03021
]
ELQ88_33755 (rho)
03019 Messenger RNA biogenesis [BR:
psmp03019
]
ELQ88_33755 (rho)
Transcription machinery [BR:
psmp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ELQ88_33755 (rho)
Messenger RNA biogenesis [BR:
psmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ELQ88_33755 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
QCY15341
LinkDB
All DBs
Position
complement(6785494..6786753)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgctgacgcttcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccaaaggaaggcgagcgttatttcgcactgctcaaggtcgatacgatcaac
tacgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggcaacggttccaccgaagacctgaccggtcgt
gtcatcgacctgtgcgccccgatcggcaaaggccagcgcggtctgatcgttgcaccgccg
aaagccggtaagaccatcatgctgcagaacatcgcggcgaacatcgcacgtaacaatcct
gaagttcatctgatcgtattgctgatcgacgaacgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgacgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggctcgcgcctacaacaccgtgatcccgagc
tccggcaaagtgctcaccggtggtgtcgatgcccacgccctggagaaaccgaaacgtttc
ttcggtgccgcgcggaacatcgaagaaggcggttcgctgaccatcatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagaattcaaaggcacgggtaac
atggaactgccgctggatcgtcgtatcgctgaaaaacgtgtgttccctgcgatcaacatc
aaccgttccggcacccgccgcgaagagttgctgacggccgacgacgagttgcaacgcatg
tggatcctgcgcaagctgttgcacccgatggacgaaatcgccgccatcgagttcctggtc
gacaagttgaaaacgaccaagaccaacgatgagttcttcctgtcgatgaaacgcaagtaa
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