Pseudomonas sp. MT-1: MT1_0122
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Entry
MT1_0122 CDS
T10396
Name
(GenBank) RNA polymerase sigma 28 subunit FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
psmt Pseudomonas sp. MT-1
Pathway
psmt02020
Two-component system
psmt02025
Biofilm formation - Pseudomonas aeruginosa
psmt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psmt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MT1_0122
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
MT1_0122
09142 Cell motility
02040 Flagellar assembly
MT1_0122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psmt03021
]
MT1_0122
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
psmt02035
]
MT1_0122
Transcription machinery [BR:
psmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MT1_0122
Bacterial motility proteins [BR:
psmt02035
]
Flagellar system
Flagellar assembly proteins
Stator
MT1_0122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BAP77298
LinkDB
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Position
complement(136158..136937)
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AA seq
259 aa
AA seq
DB search
MSATCPIDYYGATPAGPSVFAPAVEQRWLMQYLPLVKRIVRQLSLQANQVLDREDMEQIG
MMGLLEGLRRYGEPDEGFGKFASLRIRGAILDELRRQDWRPRQVRQQAHKVRDAIRDLSR
QLGHEPSDEEIKAHTGLDEKEYQAFLCADSSEAIESLDELLQSGHEHFPDTTELFEERLI
KERVLAQALARLDERERLVLTLYYQHELSLKEIALVLEVSDARVCQLSKQAIGKACRFLG
ASDASIAAAPEPVFARGKA
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccacttgccccatcgactattacggcgctacgccggccggcccctcggtgttc
gcaccggcggtcgaacagcgttggctgatgcagtacctgccgctggtcaaacgcatcgtt
cgccagctgtcactgcaggccaaccaggtgctcgaccgcgaggacatggaacagatcggc
atgatggggctgctcgaaggcctacgccgctacggcgagccggacgaaggcttcggcaag
ttcgcgtccctgcgaatccgtggtgccattctcgatgagctgcgccgccaggactggcgc
ccgcgccaggtccgccagcaagcccacaaagtccgcgatgcgatccgcgatctgtcacgt
caattgggccacgaacccagcgacgaggagatcaaggcccacaccggcctcgatgaaaag
gagtaccaggcgttcctctgtgcggattcatcagaggccatcgagagcctcgacgagctg
ctgcagagcggccacgagcatttcccggacaccaccgagctgttcgaggagcgcctgatc
aaggagcgcgtcttggcgcaggcgctggcacggctggacgagcgcgaacgcctggtgctg
acgctgtattaccagcacgaactgagcctgaaagaaatcgccctggtgctggaagtcagc
gatgcccgggtttgtcagctaagcaagcaggcgatcggcaaggcctgtcggtttttaggg
gcttctgacgcatcgatcgcggccgcgccggagcctgtttttgcgcggggcaaggcatga
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